Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1872 ATGGTTTATACTTCCATCCCAGCATATATTGATCAAGCCAACTGGCAGCAACAGGTAAATAATTAAAGGCAGCCAAATCATCAACCAGGAAACAACAACACTGGTTCCAGTTCCCATCTTATTCTTCCACCACCACCACAACAACCGCCGCCATCGCTACCGCCATCGCACCTGCATGGACCCAGTGGCACTACCACTGGATCCATCAGGCCAGGTTCCATGGCGGATAGGGCCAGGATAGCCAACATACCCATGCAAGAAGCTCAACAAAAGTGTCCAAGATGTGATTCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGTCTCTCTCAGCCCCGCCACTTCTGCAAGACTTGCAGAAGGTACTGGACACGTGGCGGAGCCTTAAGGAACGTTCCGGTTGGTGGCGGCTGCCGAAGGAACAAGAGGAGCAAGGGAAGCACCTCTGGCAGTGCCAAGTCGCCGGCAAACTCCGATCGCCAAACTGCTAGTGCTGGTTCTGCCTCTACAACCAGTGGTTCTTCTTCTGCTGACATGGTGGTAGGTCTTGGCCCTCCAGTGCCTTCTTCTCTTAGATTCATGGCTCCATTGCATCAACTCAGCGATCACCACCTTGGTGGAGAAATAGGCTTAAACTATGGCTTGAACTATGGTGCGATTTCGGGTCCAATGGGAGGAGTAGGAGACTTGAATTTCCATATAGGAAGTACTTTGAATAGTGGTGGTTCTGTGTTATCTGGTTTGGACCAATGGAGGGTGCCACAAACACACCAATTTCCCTTCTTGTCTGGTTTGGAAGCTTCTTCATCGCATGGGTTGTACCCATTTGAAAGTGGTAATAATGATGGTTTTGGTGGTGCTCCTAAGGTTTCAACTTCTGGGGTGATGTCTCAGCTTGCTTCTGTGAAAATGGAAGAGAATCAGCAACTTGGTTTCCCTAGACAGTTCTTGGGTATGAATAGTAATAACCCTAATACAAGTGAGCAATATTGGAGTGGTGGTGGTGGTGCCACTGCAGCTTGGACGGATCTTTCTGCCTTTACCTCTTCTTCCACTACTAGTAACCCACTATAA 1077 0.4847 MVYTSIPAYIDQANWQQQVNN*RQPNHQPGNNNTGSSSHLILPPPPQQPPPSLPPSHLHGPSGTTTGSIRPGSMADRARIANIPMQEAQQKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGSTSGSAKSPANSDRQTASAGSASTTSGSSSADMVVGLGPPVPSSLRFMAPLHQLSDHHLGGEIGLNYGLNYGAISGPMGGVGDLNFHIGSTLNSGGSVLSGLDQWRVPQTHQFPFLSGLEASSSHGLYPFESGNNDGFGGAPKVSTSGVMSQLASVKMEENQQLGFPRQFLGMNSNNPNTSEQYWSGGGGATAAWTDLSAFTSSSTTSNPL* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1872 357 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 4 353 - -
Apr4g1872 357 Pfam Dof domain, zinc finger 88 143 IPR003851 GO:0003677|GO:0006355
Apr4g1872 357 MobiDBLite consensus disorder prediction 142 178 - -
Apr4g1872 357 MobiDBLite consensus disorder prediction 130 181 - -
Apr4g1872 357 MobiDBLite consensus disorder prediction 41 56 - -
Apr4g1872 357 ProSiteProfiles Zinc finger Dof-type profile. 89 143 IPR003851 GO:0003677|GO:0006355
Apr4g1872 357 ProSitePatterns Zinc finger Dof-type signature. 91 127 IPR003851 GO:0003677|GO:0006355
Apr4g1872 357 MobiDBLite consensus disorder prediction 20 71 - -
Apr4g1872 357 MobiDBLite consensus disorder prediction 20 40 - -
Apr4g1872 357 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 353 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1872 Apr-Chr4 26246774 26248000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1872 1 350 C2C2-Dof Transcription Factor Family AT2G37590 41.509 9.11e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr4g1872 zf-Dof 6.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1872 - - gmx:100796820 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1872 4 26246774 26248000 Apr4g1872 4 26246774 26248000 ECH