Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1410 ATGTCTGAGACTGAGAAAGATCCGGGTATCAGGCTATTTGGCAGGAAGATTCCGGCGCCGGAATGTCAGATTCCGGCCAACTCTGGACCCTCGGATGCTTGCAGCAGCAAAAAGAAAGCAGAACCAGAAACCCTTTGTGAAGAAAACTCTCAGCCACAAGAGAATTCTTCAGATTTAAGGTATAGTAAACAAGAGTCCCAGCATAAGGTGCAGGAAAAAGATCGAATAGTAAATGGCAAGCCTGTGGAAGATAATATGGAGACTGGTAGCACTGATGAAGATAAAATCTTAAAGAAACCAGACAAGATTCTTCAGTGTCCACGATGCAACAGTTTGGACACCAAGTTTTGTTATTTCAATAACTATAATGTTAATCAACCTCGCCATTTCTGCAAAAACTGCCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCCATTGGTGCTGGGAGACGGAAGAATAAGCACTTAGCCTCTCAATATGGACACATTATAGTAAACTCTGATGGAGTTCCAACCTCTAGATTAGAATCCACAGACTCGTCCCGTCACCAACCTCGACATATCTCAAGTCTTGAATCCTCAACTGCTTTCAGGTCTTCAACAGATAATGGGACTGTATTGAAATTTGGTCCAGATACACCTCTCTGTGAATCGATGGATTCAATGCTTAATCTTAGAGACCAGAGAAGAAGTGTTGATGCAAGTTCTATCAGTTGTGTAGAATACGGAGGGGAACAATCGCTATGTGGATACTCGGTGACGAGTACTACTCAAGGAAATGAACTATCAGAACATAATGCGTCAAATTGGTTGCAATGTTACCCTGTTCCTCCATGGGTATTACCTTGGAATCAAGATTGGAATAATGCTGCTTCCATGGCAGTGGTTAATCAATCTTCAGCATCCACGTGTAACCCTTATAGCACTAGTCCCACTGCAATGCAATGGTGTCCCACACCAATGGCTGCAATTCCAGGCATTTACCCACCCAGCATGCCTTTGCAACTTGTATCAGCATCATACTGTAACGGAACACCACTTTGGGCTGCTGGAACTGGGGCAGTGTCAATAGGGTCCAATGCTTGCGTTTCGCCTTCTTCCTCCACTAGTAACAGTTGCTGTTCAGGCAATGGTTCCCCAACGCTGGGAAAACACACTAGAGATACAGTTTTCACTGATGAAGAGAAATTAGAGAAGTGTGTTTTGGTTCCAAAGACCATTAGAATCGATGCTCCAAATGAGCCCTCAAAAAGTCCTCTACGAGCTGCGTTAGCTATCAAGCCTGAGAAGCAGCAATCTTTATCAAATGATGACATTTTGAAAAGAACTGAATCCAAAGAAGGCAAAGATCGCATATTGGGTGCCTCTCAAATCTTGGAAGCCAATCCAGCCGCTATTTCTCGCGCTCATGCATTTCAGGAGAGCATATAA 1440 0.4361 MSETEKDPGIRLFGRKIPAPECQIPANSGPSDACSSKKKAEPETLCEENSQPQENSSDLRYSKQESQHKVQEKDRIVNGKPVEDNMETGSTDEDKILKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHLASQYGHIIVNSDGVPTSRLESTDSSRHQPRHISSLESSTAFRSSTDNGTVLKFGPDTPLCESMDSMLNLRDQRRSVDASSISCVEYGGEQSLCGYSVTSTTQGNELSEHNASNWLQCYPVPPWVLPWNQDWNNAASMAVVNQSSASTCNPYSTSPTAMQWCPTPMAAIPGIYPPSMPLQLVSASYCNGTPLWAAGTGAVSIGSNACVSPSSSTSNSCCSGNGSPTLGKHTRDTVFTDEEKLEKCVLVPKTIRIDAPNEPSKSPLRAALAIKPEKQQSLSNDDILKRTESKEGKDRILGASQILEANPAAISRAHAFQESI* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1410 479 ProSitePatterns Zinc finger Dof-type signature. 106 142 IPR003851 GO:0003677|GO:0006355
Apr4g1410 479 PANTHER CYCLIC DOF FACTOR 2 1 478 IPR045174 GO:0003700|GO:0006355
Apr4g1410 479 PANTHER CYCLIC DOF FACTOR 3-LIKE 1 478 - -
Apr4g1410 479 MobiDBLite consensus disorder prediction 1 74 - -
Apr4g1410 479 ProSiteProfiles Zinc finger Dof-type profile. 104 158 IPR003851 GO:0003677|GO:0006355
Apr4g1410 479 MobiDBLite consensus disorder prediction 171 198 - -
Apr4g1410 479 Pfam Dof domain, zinc finger 101 158 IPR003851 GO:0003677|GO:0006355
Apr4g1410 479 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1410 Apr-Chr4 14090313 14092895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1410 7 478 C2C2-Dof Transcription Factor Family AT5G39660 32.472 3.98e-59 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr4g1410 zf-Dof 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1410 - - gmx:100813787 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1410 4 14090313 14092895 Apr4g1410 4 14090313 14092895 ECH