Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0940 ATGGAAGGGATAGCTCCCAATTCATGCACAAGGCCAGGGTTAGAGAAGAAAGCAAGACCACAAGAACAATTGAATTGTCCAAGGTGCAGTTCAACCAACACAAAGTTCTGTTACTACAACAACTACAGCCTCACACAACCCAGATACTTCTGCAAGACTTGTAGAAGGTATTGGACAGAAGGTGGGTCTCTCAGAAACGTGCCTGTTGGAGGTGGCTCAAGGAAAAACAAGAAGGTCTCATCATCATCATCATCAAAGGTTCCTGACTTGAATCCACCAACCGTTTCATCACTCTCTTCCCAAAACCCTAAAATGCAAGGAGTCCACGACCTTAATTTGGCTTTCCCTGCAGCTATGGACAAGTACCATGGCATGTCTCCATATATTGAGATGCCAAAACTTGAAATTGGCGACACCACTAGTCACCACCATAGCTCTTCTTCTGCTCCAACTTCTCTTTCAGCAGTTGAGCTACTACGCTCTGGCATGGCTTCTAGGGGTTTGAATCCTTATGCTCCTAATCCTTTGATGTCAAGCTCAGAAGCCCTTTACCCACCTGGCTTTCCCATGCAAGAGATCAAACCAAACCTTAGCTTTTCAGTTGATATGCTTGGAAACAGATCATATGGAGTTCAAGAGAATGGTGGTGGGAGGGTTTTGTTCCCTTTTACTTCTGCAGGTGTTGATGTCGAACACAATAAAGAACAAGGAAATTCCAATGGATATTGGAGTGGAATAATTGGTGAAGGGTCATCATGGTAA 762 0.4423 MEGIAPNSCTRPGLEKKARPQEQLNCPRCSSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVSSSSSSKVPDLNPPTVSSLSSQNPKMQGVHDLNLAFPAAMDKYHGMSPYIEMPKLEIGDTTSHHHSSSSAPTSLSAVELLRSGMASRGLNPYAPNPLMSSSEALYPPGFPMQEIKPNLSFSVDMLGNRSYGVQENGGGRVLFPFTSAGVDVEHNKEQGNSNGYWSGIIGEGSSW* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0940 253 MobiDBLite consensus disorder prediction 65 105 - -
Apr4g0940 253 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Apr4g0940 253 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Apr4g0940 253 MobiDBLite consensus disorder prediction 75 105 - -
Apr4g0940 253 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Apr4g0940 253 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 13 247 - -
Apr4g0940 253 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 247 IPR045174 GO:0003700|GO:0006355
Apr4g0940 253 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0940 Apr-Chr4 7647895 7649596 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0940 16 253 C2C2-Dof Transcription Factor Family AT3G61850 50.000 7.07e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr4g0940 zf-Dof 3.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0940 - - pvu:PHAVU_006G114900g 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0940 4 7647895 7649596 Apr1g0644 1 7727150 7728741 ECH
Apr4g0940 4 7647895 7649596 Apr4g0940 4 7647895 7649596 ECH
Apr10g1202 10 24329983 24331957 Apr4g0940 4 7647895 7649596 ECH
Apr4g0940 4 7647895 7649596 Apr10g1202 10 24329983 24331957 PCT