Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0386 ATGCAGGCTAATGTAGAAGTTTCACCAAATTGTCCCAGGTGTGGTTCTTCCAATACCAAGTTCTGTTACTACAATAATTATAGTTCAAGTCAACCACGGTACTTTTGCAAAGGCTGCAGAAGGTACTGGACCAAAGGAGGATCCCTCCGCAACGTGCCTGTTGGTGGTGGCTGCCGCAAAAGTAGAAGGGCTAAACATATCAAGACCTTAAGACAAGCCAATAACACAGTTGGGCATTCTCATGATCTGAGAAGGGTGTCATCTTCAGTTGTATCTGATGCTCCAAATATTGATCTTGCGCAGGTTTATGCAAGTTTTGTCAATCAGAAGCCAGATTCAAGAGATGCCATTGAGAAGCCTGATGAAACAGTTTTATATCCTTCTTCTGAGTATTCAAGATTTTTGAACAATGATTTTAACCACAGTGCTTTGCCTGATGAACTTGGTCTTGCTGAGTGTTTGCATTTTGATGGACAATCCACAGAATCCCATTTCAGTGAGAGTAATATTCAAATGTATTTTTGCGGGTTCAACTCTATGCAGAAGCATATTCATGATACAACCAATTTTGAGTTGCCACCCTTGCCTGGTGAGGAGGCTGCAACCTCGCATGATGATATGTTGTGGTCCAATTCTGTGATGATGGTAGATCATGCCTTTCAAGCAACTCAATCGCCCCTTTTTGAACCTGAAGCTCACGATGCAGACTTCTTAATGAGCAGTTATTGGAATTGCCACTTCGATTTGCCAAAGGATGCTTCTTTTCCCATTCCTTGA 777 0.4208 MQANVEVSPNCPRCGSSNTKFCYYNNYSSSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRAKHIKTLRQANNTVGHSHDLRRVSSSVVSDAPNIDLAQVYASFVNQKPDSRDAIEKPDETVLYPSSEYSRFLNNDFNHSALPDELGLAECLHFDGQSTESHFSESNIQMYFCGFNSMQKHIHDTTNFELPPLPGEEAATSHDDMLWSNSVMMVDHAFQATQSPLFEPEAHDADFLMSSYWNCHFDLPKDASFPIP* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0386 258 ProSitePatterns Zinc finger Dof-type signature. 11 47 IPR003851 GO:0003677|GO:0006355
Apr4g0386 258 ProSiteProfiles Zinc finger Dof-type profile. 9 63 IPR003851 GO:0003677|GO:0006355
Apr4g0386 258 Pfam Dof domain, zinc finger 10 63 IPR003851 GO:0003677|GO:0006355
Apr4g0386 258 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 254 IPR045174 GO:0003700|GO:0006355
Apr4g0386 258 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 2 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0386 Apr-Chr4 3297637 3298413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0386 2 253 C2C2-Dof Transcription Factor Family AT3G52440 40.377 2.70e-49 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr4g0386 zf-Dof 4.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0386 - - gmx:778109 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0386 4 3297637 3298413 Apr4g0386 4 3297637 3298413 ECH
Apr4g0386 4 3297637 3298413 Apr8g0682 8 6435401 6436288 PCT