Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2202 ATGGCTCAAGTACAAAGTAGTCAAGACAGTGAAGGCATTAAGCTATTTGGGACAACAATTACGTTGCATGGTAGAGAAATAAAGGAAGAAAAAAAAGAAAGTGAAGAAGGGAGAGAGAAGAGGCCAGATAAGATCATAGCATGCCCAAGATGCAAGAGCATGGAAACAAAGTTTTGTTACTTCAATAATTACAACGTTAATCAGCCTAGGCATTTTTGCAAGGGCTGCCAGAGATACTGGACAGCTGGTGGGGCCCTTCGCAACGTGCCGGTGGGTGCCGGCCGGCGAAAGGCCAAACCACCGTGCCCTGGTGCCGACGGGTTTGTGGATGGTGCATCCACCATCCAACAGTTCGGTTTGGATGAGGGGTTGGTTTTGGATGAATGGCATGTTGCCACCGTGTCTCATGCTGATTTCCGGCAGCTTTTTCCGTCCAAGAGGCGGAAGACGAGTTCAGCTCAACATGAATGTCAATAA 477 0.4822 MAQVQSSQDSEGIKLFGTTITLHGREIKEEKKESEEGREKRPDKIIACPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPVGAGRRKAKPPCPGADGFVDGASTIQQFGLDEGLVLDEWHVATVSHADFRQLFPSKRRKTSSAQHECQ* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2202 158 Pfam Dof domain, zinc finger 44 99 IPR003851 GO:0003677|GO:0006355
Apr3g2202 158 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 5 153 - -
Apr3g2202 158 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Apr3g2202 158 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Apr3g2202 158 PANTHER CYCLIC DOF FACTOR 2 5 153 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2202 Apr-Chr3 37786052 37787366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2202 6 157 C2C2-Dof Transcription Factor Family AT2G34140 56.213 2.48e-63 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr3g2202 zf-Dof 3.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2202 - - vra:106779806 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2202 3 37786052 37787366 Apr3g2202 3 37786052 37787366 ECH