Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2192 ATGATGTTGGATACTAAGAGGGTTTTGGAGCGTCAACTGATGAGTATTCTCCATTGTTGCACCAACCTCAACCACGTCAAACAAGTTCATGCCAACATCTACCGCAACAACCTCCACCAATGTTCCTACGTTATCACAAAGCTCCTTCGCGTTCTCACCATCTTCCCCCACGTTCCCCTCCACTCCTACCCTCGCCTTCTCTTCTCGCAGGTTCATTCTCCAAACCCATTTCTATGGACCGCTCTCATTCGCGCCTACGCTCTTCGAGGACCCCTTTTTGAAGCGCTTCGTTTGTACGCTTCTATGAGGAAGCAACGCAGCGGTCCCGTCTCCTTTACCTTCTCTGCTCTGCTTTCCGCTTGTGGCGTTGCTCAAGAAGCCGCTTTGGGCGCGCAGCTCCATGCCCAGACACTCTTGTTAGGTGGGTTCGCGTCTGATTTGTACGTCAACAACACCCTGATTGATATGTACGTGAAATGTGGGTTTTTGCATTGTGCGCGCAAGGTGTTCGATGAAATGCCTAAACGGGATGTGGTTTCTTGGACGGAGTTGATTGTTGCCTACGCAAGGAGTGGTGATATGGAGTCCGCGCAGGAATTGTTTGATGGGTTGCCTGGGAAGGATATGGTGGCTTGGACTGCAATGGTCAATGGGTATGCCCAGAATGCCATGCCAAAGAAAGCGTTGGAGTTTTTTCAGCGGTTGCAAAATGCGGGTATAGAGATCGATCAGGTTACCTTGGTTGGTGTCATATCAGCTTGTGCTCAATTGGGTGCATCTAAGTATGCTAACTGGATTAGGGACATTGCTGAGAGTTCTGGATTTGGGGCAGCGAGTAATGTCCTTGTGGGATCAGCATTGATTGACATGTACTCGAAATGCGGTAGTGTGGAGGAGGCATATAATGTCTTTAAAGGAATGAAGGAAAGAAATGTGTTTTCTTACAGTTCCATGATTGTGGGGTTTGCAGTACATGGCCGTGCTCATGCGGCAATTAAGTTATTTTATGAAATGTTGGAAACAGAGATAAAACCAAATCATGTTACTTTTGTAGGGGTGCTTACAGCGTGCAGTCACTCAGGCATGGTAGACCAAGGTCAGCAGCTTTTTGCTACCATGGAAAGATGTTTTGGTGTTGCTCCAACTACAGATCATTACGCTTGCATGGCTGATCTTCTTGGCCGAGCTGGACTCTTGGAAAAAGCACTTCGGCTTGTTGAGGCAATGCCTATGGAGCCCAATGGAGCTGTGTGGGGAGCGCTTCTTGGAGCGTCACACGTCCATGGGAACCCTGATGTTGCCGAAATTGCTTCAAGCCATTTATTTGAGCTTGAACCTGATAATATAGGAAATTATTTATTACTTTCTAACACTTATGCATCAGCTGGAAGATGGGATGACGTGTCAAGGGTCAGGAAATTGATGAGAGGTAAAAAATTGAAGAAAAATCCAGGGTGTAGCTGGGTTGAAGCAAAAAATGGTATGGTTCACGAGTTCTTTGCTGGTGATGTGAAACATCCAGAAATTAATGAGATAAAGAAGGAATTAGATGATCTTTTGGAAAGACTGAAGGCTATTGGATACCAGCCTAACCTAGGATCGGTGCCATATGATATTAATGATAAAGAAAAGAGGCTTGTGTTAATGGCTCATAGTGAAAAACTAGCTTTAGCTTTTGGATTGCTGAATACTGATGCTGGTTCCACTATAAAGATTATGAAGAACGTTAGGATATGTGAGGATTGTCATATTCTAATGTGTGGCGCATCAAAAGTTACAGGAAGGAAAATAGTTGTGAGGGATAACATGAGATTCCACCACTTTCTTAATGGGGCTTGCTCATGTAATAATTTTTGGTAA 1860 0.45 MMLDTKRVLERQLMSILHCCTNLNHVKQVHANIYRNNLHQCSYVITKLLRVLTIFPHVPLHSYPRLLFSQVHSPNPFLWTALIRAYALRGPLFEALRLYASMRKQRSGPVSFTFSALLSACGVAQEAALGAQLHAQTLLLGGFASDLYVNNTLIDMYVKCGFLHCARKVFDEMPKRDVVSWTELIVAYARSGDMESAQELFDGLPGKDMVAWTAMVNGYAQNAMPKKALEFFQRLQNAGIEIDQVTLVGVISACAQLGASKYANWIRDIAESSGFGAASNVLVGSALIDMYSKCGSVEEAYNVFKGMKERNVFSYSSMIVGFAVHGRAHAAIKLFYEMLETEIKPNHVTFVGVLTACSHSGMVDQGQQLFATMERCFGVAPTTDHYACMADLLGRAGLLEKALRLVEAMPMEPNGAVWGALLGASHVHGNPDVAEIASSHLFELEPDNIGNYLLLSNTYASAGRWDDVSRVRKLMRGKKLKKNPGCSWVEAKNGMVHEFFAGDVKHPEINEIKKELDDLLERLKAIGYQPNLGSVPYDINDKEKRLVLMAHSEKLALAFGLLNTDAGSTIKIMKNVRICEDCHILMCGASKVTGRKIVVRDNMRFHHFLNGACSCNNFW* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2192 619 Pfam PPR repeat 386 410 IPR002885 -
Apr3g2192 619 Pfam PPR repeat 151 177 IPR002885 -
Apr3g2192 619 Pfam PPR repeat 179 203 IPR002885 -
Apr3g2192 619 PANTHER BNAC09G18050D PROTEIN 5 602 - -
Apr3g2192 619 TIGRFAM PPR: pentatricopeptide repeat domain 151 179 IPR002885 -
Apr3g2192 619 TIGRFAM PPR: pentatricopeptide repeat domain 313 346 IPR002885 -
Apr3g2192 619 TIGRFAM PPR: pentatricopeptide repeat domain 210 243 IPR002885 -
Apr3g2192 619 TIGRFAM PPR: pentatricopeptide repeat domain 286 312 IPR002885 -
Apr3g2192 619 TIGRFAM PPR: pentatricopeptide repeat domain 78 106 IPR002885 -
Apr3g2192 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Apr3g2192 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 310 IPR002885 -
Apr3g2192 619 Pfam E motif 428 490 IPR046848 -
Apr3g2192 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Apr3g2192 619 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5 602 - -
Apr3g2192 619 Pfam Pentatricopeptide repeat domain 79 122 IPR002885 -
Apr3g2192 619 Gene3D Tetratricopeptide repeat domain 285 517 IPR011990 GO:0005515
Apr3g2192 619 Gene3D Tetratricopeptide repeat domain 10 139 IPR011990 GO:0005515
Apr3g2192 619 Coils Coil 509 529 - -
Apr3g2192 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Apr3g2192 619 Pfam PPR repeat family 207 255 IPR002885 -
Apr3g2192 619 Pfam PPR repeat family 310 358 IPR002885 -
Apr3g2192 619 Pfam DYW family of nucleic acid deaminases 527 619 IPR032867 GO:0008270
Apr3g2192 619 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Apr3g2192 619 Gene3D Tetratricopeptide repeat domain 141 277 IPR011990 GO:0005515
Apr3g2192 619 Pfam E+ motif 496 523 IPR046849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2192 Apr-Chr3 37726442 37729187 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g2192 3 37726442 37729187 Apr3g2192 3 37726442 37729187 ECH