Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g2136 ATGGGTATGGGTATGGGTATGGGTGGGGGCAAAGGAGTTGTTTGGTTAAAAGTAGTAGCAGCAATGGCGGTGATAGCGAGCGTGGGCTTAGTAGCAGAGGCTCAGCTAGTAGCAGAGGCTCAGCCAGAGGCCAAGTTCAAGTGCGGGATGGAGAACGCGACGTGTCACGGCCTGATAGACTACAAGCACCCAAACGGCACGACACTGGGCGCAATCCAAACGCTGTTCAGCGTGAAGCACCTGGTGGACATCCTGGGAGCAAACAACCTTCCCACAAACACCACTAAGAACTACCGAATCACACCGGAGGAGGTTGTTAAGGTGCCGTTTCCGTGCAAGTGCTCGAACTCGACGGGACTCTCCAACGGGGTTCCTCTTTACAAAATTAAAAAAGGGGACACGCTGAACGACATAGCCACCACCGTTTTCGCGGGTTTGATGAAGTACCCCCAGATCCAGGTTGCAAATAAGATACCTGATGCTAATAATATCACTGCTGGAGATACCCTTTGGATTCCCCTCCCATGTAGCTGCGATCAGGTGGGTGGCAGCAGTGTCGTGCACTATGCCCACCTTGTCCAATCTGGCAGTTCCGTTCAAGCCATTGCTGATCAGTACGGTACCACCCAGCAGATTCTACTCACCCTCAATGGGATTACTGACCCCAAGACTCTTGAGGCTGGTCAAATTCTCGATGTTCCCCTCCGAGCTTGTTCCTCCAGTGTGAAAAATGACTCCTTGGATTCCCCTTTGCTTGTTGCAAATGCCTCTTACGCTTATACTGCTAATGAATGCGTCAAGTGCAAGTGCGATTCCGGTAACAACTACATATTGCAATGCGAGCCATCCCAACTCAAACCAACCAACTGGTCCGTTTGCCCCTCTATGGAATGCTCACCAAACATCTTCATCGGCAACACCACCTCTACAGATTCATGCAATCGCACAACCTGTGACTATACTGGTTATAGCTCCCGCAATATCTCTACCGCACTTGTAACACACGACACTTGTGCTGTGCCACCAAGTGGTTCAGGTTCAGGGGCATCCAGGAGCACTATACAAGCCTTGCTTTGGAATAATCTTTTCGTTGGCATTCACTTTCTCCTCTTTTTTGTCTATGTTTTGTAG 1131 0.5013 MGMGMGMGGGKGVVWLKVVAAMAVIASVGLVAEAQLVAEAQPEAKFKCGMENATCHGLIDYKHPNGTTLGAIQTLFSVKHLVDILGANNLPTNTTKNYRITPEEVVKVPFPCKCSNSTGLSNGVPLYKIKKGDTLNDIATTVFAGLMKYPQIQVANKIPDANNITAGDTLWIPLPCSCDQVGGSSVVHYAHLVQSGSSVQAIADQYGTTQQILLTLNGITDPKTLEAGQILDVPLRACSSSVKNDSLDSPLLVANASYAYTANECVKCKCDSGNNYILQCEPSQLKPTNWSVCPSMECSPNIFIGNTTSTDSCNRTTCDYTGYSSRNISTALVTHDTCAVPPSGSGSGASRSTIQALLWNNLFVGIHFLLFFVYVL* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g2136 376 SUPERFAMILY LysM domain 189 234 IPR036779 -
Apr3g2136 376 CDD LysM 127 172 IPR018392 -
Apr3g2136 376 Gene3D LysM domain 180 248 IPR036779 -
Apr3g2136 376 SMART LysM_2 126 173 IPR018392 -
Apr3g2136 376 SMART LysM_2 190 234 IPR018392 -
Apr3g2136 376 ProSiteProfiles LysM domain profile. 125 172 IPR018392 -
Apr3g2136 376 PANTHER BNAC03G47500D PROTEIN 36 355 - -
Apr3g2136 376 SUPERFAMILY LysM domain 126 174 IPR036779 -
Apr3g2136 376 CDD LysM 191 233 IPR018392 -
Apr3g2136 376 Pfam LysM domain 191 234 IPR018392 -
Apr3g2136 376 Pfam LysM domain 127 173 IPR018392 -
Apr3g2136 376 ProSiteProfiles LysM domain profile. 189 233 IPR018392 -
Apr3g2136 376 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 36 355 - -
Apr3g2136 376 Gene3D LysM domain 126 179 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g2136 Apr-Chr3 37283240 37285212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g2136 36 330 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 49.664 7.29e-95 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g2136 - - gmx:100804190 525.398