Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1828 ATGGGTTTGAGTTCTAAGCAGGTTTCAAGCAGTGGACTTGATTGGAAACAAACCTTATTGGAAGCTCAAAACTTGGAGCTTCCAAAGCCTCATCTGATGAGGAAACAACAGCAACAAACTCAGCAATCAGAGTCTTTGAAGTGCCCAAGATGTGACTCTACAAACACCAAATTTTGTTACTACAACAACTACAACAAATCTCAGCCTCGCCATTTCTGCAGGGCTTGCAAGAGGCACTGGACTAAAGGTGGAACTCTACGAAATGTTCCAGTTGGTGGTGGCAGGAAGAATAAGAGGGTCAAAAAATCAATCACCCCAACATCAACATCTTCCACCACCGCAACACCAACCACAACCTCTACTTGCACCACCACCTCAATTGGCAACATGGATGGTATCTTGAATACCCAAATAACAATTCAAACTCCTCTATCACTGAGTGATCACAAAAGCATGCCTTCCTCTCTCTACCAAGCTCTAATTCGTCCACGACCTTTGCTGCTACAACAGAATCCGATGAACACCAGAGACTTACAAAGCAAAGAGTTTGGTATTGGTAATGCTAATAATGGTAATGGTAATGGCATCTTTCTGAGCTCAACTTTGCCTCTAATTCCTCCTCAAATCCAAAGCCTACCCTTCCCTATCTCAACCACAATCTCCTCTTTTGACACAAACCCTTGTTCAGTGTCAACATCTCTGACATCCTCCAATGTTTATAACTATGGAGAAGTGTTCAAAACAATGGAGGAACCAACCATGAACAGCATAATGCCTAGCACTGGCTGCACTAACACACATCCATGGGAGATACCAGCAACAAGTGGTGGCATGGGAACTTCAAACTATTGGAATTGGGAGGACATTGATTCGTTGGTCTCAACTGATCTAAAAGATCCCTGGGATGATTCTGATATCAAACCTTGA 927 0.4315 MGLSSKQVSSSGLDWKQTLLEAQNLELPKPHLMRKQQQQTQQSESLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVKKSITPTSTSSTTATPTTTSTCTTTSIGNMDGILNTQITIQTPLSLSDHKSMPSSLYQALIRPRPLLLQQNPMNTRDLQSKEFGIGNANNGNGNGIFLSSTLPLIPPQIQSLPFPISTTISSFDTNPCSVSTSLTSSNVYNYGEVFKTMEEPTMNSIMPSTGCTNTHPWEIPATSGGMGTSNYWNWEDIDSLVSTDLKDPWDDSDIKP* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1828 308 MobiDBLite consensus disorder prediction 87 121 - -
Apr3g1828 308 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 30 177 IPR045174 GO:0003700|GO:0006355
Apr3g1828 308 MobiDBLite consensus disorder prediction 103 121 - -
Apr3g1828 308 PANTHER OS06G0284500 PROTEIN 30 177 - -
Apr3g1828 308 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Apr3g1828 308 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Apr3g1828 308 Pfam Dof domain, zinc finger 45 98 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1828 Apr-Chr3 34158489 34160593 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1828 20 102 C2C2-Dof Transcription Factor Family AT1G28310 65.476 3.40e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr3g1828 zf-Dof 1.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1828 - - gmx:100818111 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1828 3 34158489 34160593 Apr1g1390 1 23016018 23017872 PCT