Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1784 ATGGAACAAGGGGAAGGGAGTGTTAAGAATAGACAACCTCAGCGAGCAGCACCAGCACCAGCACAACAACCTCAGCAGCATCAGAAATGTCCACGCTGCGATTCTTTGAACACAAAGTTCTGCTATTTCAACAACTATAGCTTGTCACAGCCTCGCCACTTCTGCAAATCGTGTAAGAGGTACTGGACACAAGGTGGAACCTTCCGGAACATTCCAATTGGTGGCACTTCCCGTAAGGGGAAACGTGCCAAAATTTCTTCATCTTCCATTTCACAAACTCAACCTCAGCCAAATTTGACAACGTTGACTAGGCCTTCTCCACCACCCACTTTGGTTCAGTCAACCACTACCCCGAATTATCAACTTGGCCTTGGTGGGTACTTGTCTTCTCTCACTGCCAGTGATGTTACGGGTTCTTCTAATTCGCCTCTTCTATCTGGCTTCTATCAGATGGCAAACAGAGATAGGGTGAACTCTCTGTATCGTGCACCACAAGGTTTCATTCCAGTTCCATCAAGCGTGGCTAGTAACATTGCTGTTAATTCTCATTCTCATAATTGGTCACAAAGATTGCTCAATAATGCTACAAACCAAAGGACTAGTTCTGATGCCTCTTTGTGGAGTACTGTCAAACCCACTTCCATCAGTGGTAACTCTGATCAGAATAATATCAGAGGTGGTTCTTCTTCTTTCAACCCGAGTCTTTACCCCGATCTACCTGGGTATGGGATTGGGCCTCCTCAATAA 747 0.4565 MEQGEGSVKNRQPQRAAPAPAQQPQQHQKCPRCDSLNTKFCYFNNYSLSQPRHFCKSCKRYWTQGGTFRNIPIGGTSRKGKRAKISSSSISQTQPQPNLTTLTRPSPPPTLVQSTTTPNYQLGLGGYLSSLTASDVTGSSNSPLLSGFYQMANRDRVNSLYRAPQGFIPVPSSVASNIAVNSHSHNWSQRLLNNATNQRTSSDASLWSTVKPTSISGNSDQNNIRGGSSSFNPSLYPDLPGYGIGPPQ* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1784 248 MobiDBLite consensus disorder prediction 196 235 - -
Apr3g1784 248 MobiDBLite consensus disorder prediction 71 116 - -
Apr3g1784 248 MobiDBLite consensus disorder prediction 1 30 - -
Apr3g1784 248 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 18 116 - -
Apr3g1784 248 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 146 243 - -
Apr3g1784 248 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
Apr3g1784 248 MobiDBLite consensus disorder prediction 81 116 - -
Apr3g1784 248 MobiDBLite consensus disorder prediction 196 248 - -
Apr3g1784 248 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 146 243 IPR045174 GO:0003700|GO:0006355
Apr3g1784 248 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 18 116 IPR045174 GO:0003700|GO:0006355
Apr3g1784 248 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
Apr3g1784 248 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1784 Apr-Chr3 33686925 33687671 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1784 18 161 C2C2-Dof Transcription Factor Family AT3G45610 44.444 1.18e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr3g1784 zf-Dof 9.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1784 - - aprc:113859883 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1784 3 33686925 33687671 Apr3g1784 3 33686925 33687671 ECH
Apr3g1784 3 33686925 33687671 Apr1g1436 1 23664792 23668792 PCT