Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1783 ATGTTGGGTAACTGTGAGAAAATGGCAATAATCCCTCCAACAACGTCTAACAAATGGACACAGGCTCAAATAGATGATCACAAAATCTCTATGGGTTCCGCTGGAAGGGTTATGGAGAAACCAAGTCAAGATCTTGTGCAGCAGCAGCATCAAGCCCTCAAGTGCCCTCGTTGTGACTCATCAAACACCAAGTTCTGCTACTACAACAACTACAGTTTGTCACAGCCAAGACACTTTTGCAAAGCCTGCAAGCGATACTGGACAAGAGGTGGAACTCTGAGGAACGTTCCCGTTGGTGGTGGCTGCAGAAAAAACAAGCGTGTCAAGCGTCCAAACCTTGATGCTTCTTCTAACTCTCCTTCTAATTCTTCCACTCCCAGTTCCAATTCAAACCCTCCTTCACATTCCCACATCGATAATATTGCTTCTAGTTCCACCTCAAACCATATCATCAACCCTTTGTTTTATGGGTTACCCGGTAACGGTAATAACGGCAACTCTTGTGATGTCATGAACCTTGCTTTTCCAAGGTTCAATTTTCAGCCTCAGATGAATGCTCTTGGGTTAGGTTTTTCATCTGGGGTTATGTCCACCGAATATGGTTACCGAAATGGTTTTACTTCAAATGGCAGCAACTCGTTTCTTTCTGCTTATAATTCGATCTTTGGTTCTTCTTCAACTTGTGCACCTTCCACTCCTGTTATGGCCTCCTTGCTGAGTTCTACTTTGCTACAACAAAAAATTGTCAGTGGTGGGTTGAAGGGTGATCAAGGTAGCAACGGTTTCCAAGGATTAGCAACGCTAGAGGAGCTGCAAATGGAAGGAAATAATAGCGGTGAGAGTGTAGAGGTGGTGGCTTCAAAAGACGTGAAAGTTGAAGGACAAAACAGGTTGGAGTGGAATAATAATAATAACAATAATAGTGGCGGTGGTGGTGCTTGCCAGAACCAGATGGAGCATGTGGGTTTGTCTGATCCTAATTCGCTTTATTGGGGTGCTTGGAGTGATCAACCTAATATTGGCCCTTCAGTCACTTCTCTGATCTAG 1047 0.4413 MLGNCEKMAIIPPTTSNKWTQAQIDDHKISMGSAGRVMEKPSQDLVQQQHQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPNLDASSNSPSNSSTPSSNSNPPSHSHIDNIASSSTSNHIINPLFYGLPGNGNNGNSCDVMNLAFPRFNFQPQMNALGLGFSSGVMSTEYGYRNGFTSNGSNSFLSAYNSIFGSSSTCAPSTPVMASLLSSTLLQQKIVSGGLKGDQGSNGFQGLATLEELQMEGNNSGESVEVVASKDVKVEGQNRLEWNNNNNNNSGGGGACQNQMEHVGLSDPNSLYWGAWSDQPNIGPSVTSLI* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1783 348 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 337 IPR045174 GO:0003700|GO:0006355
Apr3g1783 348 ProSitePatterns Zinc finger Dof-type signature. 55 91 IPR003851 GO:0003677|GO:0006355
Apr3g1783 348 MobiDBLite consensus disorder prediction 98 142 - -
Apr3g1783 348 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 2 337 - -
Apr3g1783 348 Pfam Dof domain, zinc finger 51 107 IPR003851 GO:0003677|GO:0006355
Apr3g1783 348 MobiDBLite consensus disorder prediction 112 142 - -
Apr3g1783 348 ProSiteProfiles Zinc finger Dof-type profile. 53 107 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1783 Apr-Chr3 33672670 33675001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1783 1 348 C2C2-Dof Transcription Factor Family AT1G28310 36.729 1.25e-40 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr3g1783 zf-Dof 2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1783 - - gmx:778105 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1783 3 33672670 33675001 Apr3g1783 3 33672670 33675001 ECH
Apr3g1783 3 33672670 33675001 Apr1g1437 1 23678015 23680041 PCT