Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1641 ATGTGGGACAGCTTGATTCTGATGCAAGGTCAAAGGAGGACTGTTGGATCCTTCCCAGCAATTGTTAGTATGATGCAAGGGCCTAATTCTAGTGGCACTGATATGAATCATCAGTCTTCCTTGAATCATGTGCAAAATGCAGTAGATTTTAGGCTGTCAGATTATAGGGGGTCTTCTGGTGATGCCGCATGTTTACGTGGTACTGGTCCTAATGTTCAGAGTTTCAGTGGCTGGAATCCTGGTGAACCTAGTTCTAGACTAAATATGATTAACCAAGTCAATGATGATGGTCTAAAATCAGAACATGGACTGTCTTCTTCATATAGTGCTGCTACTGAGGATGGTCTCAGATCTGAAGAAAGGCAATTTGAACCAAATAATGCAATCTTTCCTGTTTCTAATCTACATGGGAATCAATCTCGAAGTCACCCTTCCTTTCTGCAAGGTTCCAGTTCCAATCATATAAACCAGAATATTAGTCTGAATACGGGGCACATTGCTAATGCTGCTGATCGTGGGAAGGGAAAAGAAGCTGGTGGTAGTGTTAATGACAACAATACTAGTGGATCAGATAAAGAGAAGACATCATTTGTCAGTGCTTCTTGTACTCATATAGGAACTTCATCTGAAAGCTCTGGATACATGGCTTGGGGTGATTGTGCGAGTTCAAGTTCCTTAGTTAATTGGGGTCCTTCTTGCAAGAGGAAGGCCCTTGAAGGTAGTTCTAGGCAACTCAGTACTGGAGGCAGCTCAAGCTCTCTTGTGCAATCTGAAAATGATTGCTGGCCTACTGATCCTGTTGATCTTAATGCTTCTACTAGCTTAAGTGATTCTACACCTTCAGAGGATATTCCAGTTACTGCTGCTCCATTACAGCAGAACACAATAAATGAAGTGAGACAAGAACCTTCCAATGCATTTCCTTTGATTAGTGTTGCAGAAAATGTGGAAAGGCCTCTAAGAAACTTTGATAGAAGAATGACCCAAATTCAGCGTCAGGAATCTGTACCTCTCAATTTACCATCGGCAGGGAGTGCTAGGCATCATAATCATTCTTCTCTGCATCAGATACCTGGCTCTAACTCATTTAATGATTCTTTGGAGTTGAGGTTAACAGCTGGAGTAACAGCTGCTAATTCTGGTGGTGCTCTGAACCCGTCCCCTGCCTTGCGCATGCATCCTTTTCCTTGGAACAGACCTACTAATCAAAGAGGGGCCAGATCTTCAACTTCTTATAATTCTGGAGAAAGAGCTGTACGGGAGGATTTTAATTTAAGAATCTTTCCAAGAGATAATACTGAGCACCCCATGAATTTACCTGAATCTTCAGGACATGAACCTACAGCATGGCATACATCTTCTGGTATTGTGAACAATTCTGGAGGTGTACCTCCAACGTCCTGGATTGGATCTAGTTCCAATGTCCACTCATCACCTAATCCTAGCTGGATATTTAATCATGAAGTGCCCACAGAAAATCTGCAGAGAGTGTCGGAGTTCAGTCCTTGGTCCTTTTTTCCATCAATTAGCTCTGCATCTGGTGTTCATAATGGTCATTCTACCCCGTCTCCTTCTGGCCCTCCTTCATTTACCCAAGGTTCTAGCAGCAATCAACCATATCTAAGAACAGCATTGTTGATGGAAAGAAGGGGTGGTGATGTTCTCTCTGCTCCCCATTCACTGCGAGCATTAACCTTTGACAATGAGGGGAGACGCCGGCTAATATCTGAGATTCGCCAAGTCTTGATTGCAATGCGGAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTCGACCCATTCCTATATCATGGCATGGCTGAAATGCATGACAGGCACAGAGAAATGCGGCTTGATGTTGACAACATGTCTTATGAGGAATTGTTGGCATTGGAGGAGCGAATTGGAGACGTGAGCACTGGATTGAGTGAGGACACGATTGTTAAGTTGATGAAACAGCGACTTTTCATGTCTGTCATGACTGAGTCTTCTACAGATCTTGAACCTTGCTGTATATGTCAGGAGGAATATGCTGATGGAGAGAATGTTGGTTCACTAGATTGTGGGCATGAGTTCCACAGTGAATGCATCAAGCAGTGGTTATTGCAGAAAAACCTGTGCCCCATTTGCAAAACAACGGCCTTAGCTACATGA 2157 0.4339 MWDSLILMQGQRRTVGSFPAIVSMMQGPNSSGTDMNHQSSLNHVQNAVDFRLSDYRGSSGDAACLRGTGPNVQSFSGWNPGEPSSRLNMINQVNDDGLKSEHGLSSSYSAATEDGLRSEERQFEPNNAIFPVSNLHGNQSRSHPSFLQGSSSNHINQNISLNTGHIANAADRGKGKEAGGSVNDNNTSGSDKEKTSFVSASCTHIGTSSESSGYMAWGDCASSSSLVNWGPSCKRKALEGSSRQLSTGGSSSSLVQSENDCWPTDPVDLNASTSLSDSTPSEDIPVTAAPLQQNTINEVRQEPSNAFPLISVAENVERPLRNFDRRMTQIQRQESVPLNLPSAGSARHHNHSSLHQIPGSNSFNDSLELRLTAGVTAANSGGALNPSPALRMHPFPWNRPTNQRGARSSTSYNSGERAVREDFNLRIFPRDNTEHPMNLPESSGHEPTAWHTSSGIVNNSGGVPPTSWIGSSSNVHSSPNPSWIFNHEVPTENLQRVSEFSPWSFFPSISSASGVHNGHSTPSPSGPPSFTQGSSSNQPYLRTALLMERRGGDVLSAPHSLRALTFDNEGRRRLISEIRQVLIAMRRGENLRAEDYMLFDPFLYHGMAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDTIVKLMKQRLFMSVMTESSTDLEPCCICQEEYADGENVGSLDCGHEFHSECIKQWLLQKNLCPICKTTALAT* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1641 718 MobiDBLite consensus disorder prediction 240 260 - -
Apr3g1641 718 SMART ring_2 671 711 IPR001841 -
Apr3g1641 718 MobiDBLite consensus disorder prediction 266 282 - -
Apr3g1641 718 ProSiteProfiles Zinc finger RING-type profile. 671 712 IPR001841 -
Apr3g1641 718 MobiDBLite consensus disorder prediction 240 282 - -
Apr3g1641 718 CDD RING-H2_TTC3 670 712 - -
Apr3g1641 718 MobiDBLite consensus disorder prediction 170 193 - -
Apr3g1641 718 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 9 718 - -
Apr3g1641 718 MobiDBLite consensus disorder prediction 96 113 - -
Apr3g1641 718 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 9 718 IPR045191 GO:0061630
Apr3g1641 718 MobiDBLite consensus disorder prediction 430 452 - -
Apr3g1641 718 MobiDBLite consensus disorder prediction 401 416 - -
Apr3g1641 718 MobiDBLite consensus disorder prediction 96 119 - -
Apr3g1641 718 MobiDBLite consensus disorder prediction 340 361 - -
Apr3g1641 718 Pfam Ring finger domain 671 712 IPR001841 -
Apr3g1641 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 634 716 IPR013083 -
Apr3g1641 718 SUPERFAMILY RING/U-box 653 715 - -
Apr3g1641 718 MobiDBLite consensus disorder prediction 514 537 - -
Apr3g1641 718 MobiDBLite consensus disorder prediction 380 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1641 Apr-Chr3 31891523 31902951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1641 25 718 C3H Transcription Factor Family AT2G15530 37.022 4.17e-117 366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1641 3 31891523 31902951 Apr3g1641 3 31891523 31902951 ECH
Apr9g0411 9 5700406 5707679 Apr3g1641 3 31891523 31902951 ECH
Apr5g1509 5 19036796 19043369 Apr3g1641 3 31891523 31902951 ECH