Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1634 ATGGCTCAGGTTCAGGTTCAGCCTCAGAATGCGATGCAGGGTGCCAACGGTGGTGCTGCTCCTCCTGCTGCTGGCGCCGCCGCGGCTGCTGCCGGTGGCGGTGGAAACCAGTTCGTGACGACGTCGCTTTACGTGGGAGATCTTGACCCGAATGTCACGGACTCGCAGCTCTATGACTTGTTCAACCAATTGGGCCAGGTTGTGTCCGTTAGGGTTTGCAGGGACTTGACCAGTCGGAGATCGCTCGGTTACGGTTATGTCAACTATAGCAACCCGCAAGATGCTGCCAGAGCATTGGATGTTCTGAACTTCACTCCTCTCAATAACAAGCCCATTCGTATTATGTATTCTCATCGTGATCCCAGTATCCGTAAAAGTGGGGCAGGAAATATATTTATTAAGAATTTGGACAGGGCAATTGACCACAAGGCATTGCATGATACGTTTTCAACATTTGGGAATATCCTTTCTTGCAAGGTAGCTACCGACTCGTCTGGGCAATCAAAAGGCTATGGCTTTGTGCAATTTGATAATGAGGAATCTGCTCAAAAAGCCATAGAGAAGCTGAATGGTATGCTTTTGAATGATAAACAAGTATATGTGGGACCCTTCCTTCGCAAACAAGATAGAGAAAGTGCTTTGGACAAGGCAAAATTTAACAATGTTTTTGTTAAGAATCTGTCAGAATCAACTACTGATGATGAATTGAAGAACATTTTTGGTGAATTTGGAACTATTACCAGTGCTGTAGTGATGAGGGATGGGGATGGGAAATCAAAGTGTTTTGGATTTGTGAATTTTGAGAATACTGATGATGCTGCTAGGGCTGTTGAGGCTCTTAATGCTAAAAAATTTGATGATAAGGAATGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAGCATGAATTGAAACTTCGCTTTGAGCAGAGCATGAAAGAAACTGCTGATAAATATCAAGGGGCAAACTTGTATATCAAAAATTTAGATGATAGCATTAGTGATGATAAGCTTAAGGAGCTGTTCTCCCCTTTTGGTACCATTACCTCTTGTAAGGTTATGAGAGACCCCAATGGCATAAGTCGTGGATCAGGATTTGTTGCATTTTCGACTCCTGAGGAGGCATCCAGAGCACTCTTGGAGATGAATGGCAAAATGGTTGTAAGCAAACCTCTGTATGTGACTCTAGCCCAACGGAAAGAAGATAGAAGAGCTAGACTGCAGGCTCAGTTTGCTCAAATGCGGCCTGTTGCAATGCCTCCGTCTGTTGCTCCTCGTGTGCCAATGTATCCCCCAGGTGGTCCAGGTATGGGTCAACAAATATTTTACGGTCAAGGCCCTCCTGCTATCATTCCTTCCCAGCCTGGATTTGGTTATCAACAACAACTTGTCCCTGGCATGAGGCCAGGTGGGGCCCCTGTGCCAAATTTCTTTATGCCAATGGTTCAGCAGGGACAACAGGGACAGCGTCCTGGTGGAAGGCGTGCTGGTGCAGTCCAGCAGTCCCAGCAGCCTGTTCCACTTATGCCACAGCAGATGCTTCCTAGGGGGCGTGTCTACCGTTATCCTCCTGGTAGGGGTATTCCTGATGTTCCTATGCCTGGGGTTGCTGGTGGTATGTTTTCTGTTCCATATGATGTTGGTGGGATGCCACTGCGTGATGCATCACTCTCCCAGCAAATTCCTATTGGAGCTTTGGCTTCAGCTCTGGCTAATGCTTCTCCAGAGCAGCAGAGGACGATGCTGGGTGAGAATCTCTACCCCCTTGTGGAGCAGTTGGAGCCGGATAATGCTGCCAAAGTGACAGGCATGCTTCTGGAGATGGACCAGACTGAAGTTCTGCACTTGCTTGAGTCACCAGAGGCCCTGAAAGCAAAGGTGGCTGAGGCTATGGACGTCCTAAGGAATGTTGCTCAGCAGCAGCAGGCTGGTGGTACTGCTGATCAGCTGGCTTCATTATCACTTAATGACAACCTTGTTTCTTAA 1989 0.4726 MAQVQVQPQNAMQGANGGAAPPAAGAAAAAAGGGGNQFVTTSLYVGDLDPNVTDSQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQDRESALDKAKFNNVFVKNLSESTTDDELKNIFGEFGTITSAVVMRDGDGKSKCFGFVNFENTDDAARAVEALNAKKFDDKEWYVGKAQKKSEREHELKLRFEQSMKETADKYQGANLYIKNLDDSISDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVAMPPSVAPRVPMYPPGGPGMGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPVPNFFMPMVQQGQQGQRPGGRRAGAVQQSQQPVPLMPQQMLPRGRVYRYPPGRGIPDVPMPGVAGGMFSVPYDVGGMPLRDASLSQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQAGGTADQLASLSLNDNLVS* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1634 662 CDD RRM1_I_PABPs 42 121 - -
Apr3g1634 662 Gene3D - 205 306 IPR012677 -
Apr3g1634 662 Gene3D - 559 642 - -
Apr3g1634 662 SUPERFAMILY RNA-binding domain, RBD 220 403 IPR035979 GO:0003676
Apr3g1634 662 Gene3D - 307 407 IPR012677 -
Apr3g1634 662 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 297 IPR000504 GO:0003723
Apr3g1634 662 CDD RRM3_I_PABPs 219 298 - -
Apr3g1634 662 Gene3D - 35 129 IPR012677 -
Apr3g1634 662 SMART rrm2_1 42 115 IPR003954 GO:0003676
Apr3g1634 662 SMART rrm2_1 324 396 IPR003954 GO:0003676
Apr3g1634 662 SMART rrm2_1 130 202 IPR003954 GO:0003676
Apr3g1634 662 SMART rrm2_1 221 293 IPR003954 GO:0003676
Apr3g1634 662 MobiDBLite consensus disorder prediction 485 504 - -
Apr3g1634 662 PANTHER RNA BINDING PROTEIN 30 645 - -
Apr3g1634 662 PANTHER POLYADENYLATE-BINDING PROTEIN 30 645 - -
Apr3g1634 662 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 42 636 IPR006515 GO:0003723
Apr3g1634 662 MobiDBLite consensus disorder prediction 1 25 - -
Apr3g1634 662 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 290 IPR000504 GO:0003723
Apr3g1634 662 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 113 IPR000504 GO:0003723
Apr3g1634 662 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 325 393 IPR000504 GO:0003723
Apr3g1634 662 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 199 IPR000504 GO:0003723
Apr3g1634 662 Gene3D - 130 202 IPR012677 -
Apr3g1634 662 Pfam Poly-adenylate binding protein, unique domain 571 635 IPR002004 GO:0003723
Apr3g1634 662 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 323 400 IPR000504 GO:0003723
Apr3g1634 662 SUPERFAMILY RNA-binding domain, RBD 41 209 IPR035979 GO:0003676
Apr3g1634 662 SMART poly_2 575 638 IPR002004 GO:0003723
Apr3g1634 662 SMART rrm1_1 42 115 IPR000504 GO:0003723
Apr3g1634 662 SMART rrm1_1 324 396 IPR000504 GO:0003723
Apr3g1634 662 SMART rrm1_1 221 293 IPR000504 GO:0003723
Apr3g1634 662 SMART rrm1_1 130 202 IPR000504 GO:0003723
Apr3g1634 662 CDD RRM4_I_PABPs 322 400 - -
Apr3g1634 662 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 201 IPR000504 GO:0003723
Apr3g1634 662 SUPERFAMILY PABC (PABP) domain 504 656 IPR036053 GO:0003723
Apr3g1634 662 CDD RRM2_I_PABPs 127 203 IPR045305 -
Apr3g1634 662 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 563 640 IPR002004 GO:0003723
Apr3g1634 662 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 119 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1634 Apr-Chr3 31807557 31814726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1634 1 657 Eukaryotic Initiation Factors Gene Family AT4G34110 71.927 0.0 926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1634 3 31807557 31814726 Apr3g1634 3 31807557 31814726 ECH
Apr9g0408 9 5662242 5667621 Apr3g1634 3 31807557 31814726 ECH
Apr5g1502 5 18994742 18998370 Apr3g1634 3 31807557 31814726 ECH