Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1625 ATGAGGAACCCTAGCTCTGATATCAAAGACTTGAACAAAGGAGCTTGGTCCAAGCAAGAAGACCAAAAACTCATTGATTATATCAACCAACACGCCGATGTTTGTTGGCGCACACTTCCTCAGGCTGCAGGTTTACTTCGGTGCGGTAAAAGTTGTAGGCTGAGATGGATAAATTATCTACGGCCAGACCTTAAAAGGGGGAACTTTGCTGAAGATGAAGAAGATCTCATCATCAAGCTTCATGCACTATTGGGCAACCGGTGGTCACTAATAGCTGGGAGATTGCCAGGGCGAACAGATAATGAAGTGAAGAACTATTGGAACTCTCACATAAGAAGAAAGCTCATTAGCAAGGGTATTGACCCAAATAATCATCGATTAAAAAACCACAAAATACCCTCCATTCATAATTCACCCACGTCTGATTGTTCAAAATCTCTAGACTTGAAAGACACATGCAAGAATGAGACAAGTAAGTTACCTCATGTTAACAATTATGGTGAAGTCTCAGATGCGGCAAGTGGCGAGGCTGAGTCATCATTTGCCCTGCCAGATTTAAACCTTGATCTCACGATAGGCATTCCTTTATCTTCACCAAGTATTTCTGAAAACAATCTAAAACTATTTCATGAATCTACGTCACCAAGGAAACTGCATTTTGCTTCCCCTTCAACACTTCTTCTGTTTCAGTGA 693 0.4141 MRNPSSDIKDLNKGAWSKQEDQKLIDYINQHADVCWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLISKGIDPNNHRLKNHKIPSIHNSPTSDCSKSLDLKDTCKNETSKLPHVNNYGEVSDAASGEAESSFALPDLNLDLTIGIPLSSPSISENNLKLFHESTSPRKLHFASPSTLLLFQ* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1625 230 Gene3D - 67 139 - -
Apr3g1625 230 PANTHER MYB TRANSCRIPTION FACTOR 2 229 - -
Apr3g1625 230 SMART sant 65 113 IPR001005 -
Apr3g1625 230 SMART sant 12 62 IPR001005 -
Apr3g1625 230 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Apr3g1625 230 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Apr3g1625 230 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Apr3g1625 230 CDD SANT 68 111 IPR001005 -
Apr3g1625 230 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Apr3g1625 230 CDD SANT 15 60 IPR001005 -
Apr3g1625 230 Gene3D - 5 66 - -
Apr3g1625 230 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 229 - -
Apr3g1625 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Apr3g1625 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Apr3g1625 230 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1625 Apr-Chr3 31706025 31707504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1625 2 216 MYB Transcription Factor Family AT4G38620 50.644 2.56e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr3g1625 Myb_DNA-binding 4.2e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1625 3 31706025 31707504 Apr3g1625 3 31706025 31707504 ECH