Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1624 ATGGCCGGCGAACTCGCCGGAGACCACACGCCGGAGCTTCTGTGCCTGGTTCACGACATCGCCGGAATGTGCGCCGGCTCCTCCTCCGGCACGGTCATTGCTGCCGACGCTATGTTCAGGAAGGACTGCACCGATCTGGTTCGCCGGATCTCACTTCTTACCCACTTGTTCGAGGAGATTAAGGAACTCAACAACGTTAACGAGTCCGCTTCTTCTTCTTCAGCTTCAGCTTCTGCTGCTTCATGGTCCTCTGATCTGGTTCTCGCTCTTCACTCTGCTCGACGCTTGCTTTCCGTCGCTAGAAACTTCCGTTCCAATTGCTCTTCTGATGGAGCTGCCAAGACCATTGTGTTCCAATTTCAGTGTGTGACGTGGAAATTGGAAAAACTGTTAAGCAACTTACCGTATGACAATTTAGACATCTCGGAGGAAGTCAAAGAACAGGTGGATTTGGTGAGAGCGCAGTTGAGACGAGCCACAGATAAATATGGGTTTATGATTTCAAAAATGCCATCTTATGAATTATCCCAGCCACTGGCTCAAGAAATTAGTCAGGTTTTTGGCAAATCTGTGAATGGATTACACAAACAACACAGTTGTCCTGAAAATTTATCAGAACTGGACAGCATTCCTAAAATTAATGGTGAGAAAAGTTGCAGCTCATATGGAGTAGGATCTCGCTTGGAAAGAGCAAGGAGCATCCCTGCTTCTTCCGAAGTTTCCTTATCGAATGCAACTGATCCTGAAAGTCAAGAGGTTTCTGAGACAAAGAGTGAAGCTAAAAGGCCTGAAGCGATTGTGATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGAGATCCTGTTATTGTGGCCACCGGTCAGACATACGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAATACAACATGTCCAAAAACTCAGCAGAAGCTCCAACATTTGACCCTTACACCAAATTATGTTTTAAGGAGCCTTATATCTCAGTGGTGTATAGAGCATAACATTGAGCAGCCCACAGGACTAACTAACGGGAAAATAAAAAAGAGTGATGGATCTTTCAGAGATGTTACAGGTGACATAGCAGCAATTGAAGCTCTGGTCCGGAAGCTCTCCAGCCGGTCAATTGAGGAGCGCAGAGCCGCTGTTACTGAAATTCGATCACTATCCAAAAGAAGTACTGACAATAGGATACTAATTGCCGAAGCTGGAGCGATTCCAGTTCTAGTCAATCTTTTAACATCAGAAGATGTGTTGACGCAAGACAACGCAGTTACTTCAATTCTCAACCTTTCTATATATGAAAATAACAAGGGTCTTATAATGCTTGCTGGTGCCATTCCATCTATTGTTCAAGTCCTTCGAGCTGGAACCATGGAAGCTAGGGAAAATGCAGCAGCAACCCTCTTTAGCTTGTCACTTGCAGATGAGAACAAGATAATAATTGGTGCTTCAGGAGCTATACCTGCTTTAGTAGAATTGCTCCAAAATGGGAGCCCTAGAGGGAAGAAGGATGCAGCAACAGCATTGTTCAATTTATGCATTTATCAAGGAAACAAGGGCAGAGCCATTAGGGCAGGGATCATCACAGCATTGTTGAAGATGCTTACAGATTCAAGCAAATCAATGGTTGATGAAGCCCTAACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCTAAAATTGCTATCGTAAAGGCAAGCACTATACCAGTTTTAATAGATCTTTTGAGGACGGGATTGCCTCGCAACAAAGAAAATGCAGCTGCCATTTTACTTGCCTTGTGCAAGAGGGACGCCGACAATCTTGCTTGTATAAGTAGACTTGGTGCTGTCATACCTCTTTCTGAACTTGCACGGAGTGGCACAGAGAGGGCTAAACGGAAGGCTACCTCATTATTGGAGCACCTGCGCAAGCTACAGCAACTTTGA 1944 0.4475 MAGELAGDHTPELLCLVHDIAGMCAGSSSGTVIAADAMFRKDCTDLVRRISLLTHLFEEIKELNNVNESASSSSASASAASWSSDLVLALHSARRLLSVARNFRSNCSSDGAAKTIVFQFQCVTWKLEKLLSNLPYDNLDISEEVKEQVDLVRAQLRRATDKYGFMISKMPSYELSQPLAQEISQVFGKSVNGLHKQHSCPENLSELDSIPKINGEKSCSSYGVGSRLERARSIPASSEVSLSNATDPESQEVSETKSEAKRPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEALVRKLSSRSIEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKIAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGAVIPLSELARSGTERAKRKATSLLEHLRKLQQL* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1624 647 SUPERFAMILY ARM repeat 367 641 IPR016024 -
Apr3g1624 647 Pfam U-box domain 268 339 IPR003613 GO:0004842|GO:0016567
Apr3g1624 647 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 366 408 IPR000225 GO:0005515
Apr3g1624 647 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 16 644 - -
Apr3g1624 647 Coils Coil 142 162 - -
Apr3g1624 647 SMART arm_5 438 478 IPR000225 GO:0005515
Apr3g1624 647 SMART arm_5 479 519 IPR000225 GO:0005515
Apr3g1624 647 SMART arm_5 561 601 IPR000225 GO:0005515
Apr3g1624 647 SMART arm_5 397 437 IPR000225 GO:0005515
Apr3g1624 647 SMART arm_5 520 560 IPR000225 GO:0005515
Apr3g1624 647 MobiDBLite consensus disorder prediction 236 251 - -
Apr3g1624 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 346 IPR013083 -
Apr3g1624 647 PANTHER U BOX DOMAIN-CONTAINING 16 644 - -
Apr3g1624 647 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 449 491 IPR000225 GO:0005515
Apr3g1624 647 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842|GO:0016567
Apr3g1624 647 Gene3D - 443 547 IPR011989 -
Apr3g1624 647 MobiDBLite consensus disorder prediction 235 261 - -
Apr3g1624 647 CDD RING-Ubox_PUB 272 314 IPR045210 -
Apr3g1624 647 Pfam Armadillo/beta-catenin-like repeat 398 436 IPR000225 GO:0005515
Apr3g1624 647 Pfam Armadillo/beta-catenin-like repeat 480 518 IPR000225 GO:0005515
Apr3g1624 647 SUPERFAMILY RING/U-box 265 342 - -
Apr3g1624 647 SMART Ubox_2 271 334 IPR003613 GO:0004842|GO:0016567
Apr3g1624 647 Gene3D - 548 646 IPR011989 -
Apr3g1624 647 Coils Coil 627 647 - -
Apr3g1624 647 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 490 532 IPR000225 GO:0005515
Apr3g1624 647 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 408 450 IPR000225 GO:0005515
Apr3g1624 647 Gene3D - 350 442 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1624 Apr-Chr3 31665258 31668417 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1624 37 646 U-box Gene Family AT1G23030 64.379 0.0 747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1624 3 31665258 31668417 Apr3g1624 3 31665258 31668417 ECH