Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1617 ATGGTGCCAATGAAGCCTTATACGCAAGGGTCGTTCTCGTCGTCTTACTACAGCGTTCTTGGCGTTAGTTCGGATTCTTCTATAGAAGACATAAGGCGTGCTTATAGGAAGCTTGCTAAGCAATGGCATCCCGATAAGTGGGCAAAGACTCCTTCTTTGCTTGGTGAAGCCAAGCACAAGTTCCAGCAAATTCAAGAAGCTTATTCAGTGTTGTCTGATCATAAGAAAAGAACCATGTACGATGCGGGCTTGTATGATCCTCAAGAGGAAGAAGACGAGGGCTTTTCTGATTTTCTGGAAGAAATGCTTTCCCTTATGGCTCAAGTGAGGAGAGAGAAAAAGCATTACGGCTTAGAAGAGTTGCAAGCCATGTTCATGGAAATGGCTCAAGGATTCAAATCTCCTTCAATGTACTGTGGGGTACCCTCAATGATGGATGAATCACGGTGCCTAAAGAGGATGCGATTTGACACAACCATGATGGAGAATAAGGGGTCACATTTTCAAGTACCTGGTCTTAACGGGTATGAAACGAGGGGTTATTGCAATTAA 552 0.4402 MVPMKPYTQGSFSSSYYSVLGVSSDSSIEDIRRAYRKLAKQWHPDKWAKTPSLLGEAKHKFQQIQEAYSVLSDHKKRTMYDAGLYDPQEEEDEGFSDFLEEMLSLMAQVRREKKHYGLEELQAMFMEMAQGFKSPSMYCGVPSMMDESRCLKRMRFDTTMMENKGSHFQVPGLNGYETRGYCN* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1617 183 SUPERFAMILY Chaperone J-domain 15 87 IPR036869 -
Apr3g1617 183 Pfam DnaJ domain 16 81 IPR001623 -
Apr3g1617 183 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 11 182 - -
Apr3g1617 183 PRINTS DnaJ domain signature 17 35 IPR001623 -
Apr3g1617 183 PRINTS DnaJ domain signature 35 50 IPR001623 -
Apr3g1617 183 PRINTS DnaJ domain signature 56 76 IPR001623 -
Apr3g1617 183 ProSiteProfiles dnaJ domain profile. 15 84 IPR001623 -
Apr3g1617 183 PANTHER PUTATIVE, EXPRESSED-RELATED 11 182 - -
Apr3g1617 183 ProSitePatterns Nt-dnaJ domain signature. 61 80 IPR018253 -
Apr3g1617 183 SMART dnaj_3 14 76 IPR001623 -
Apr3g1617 183 CDD DnaJ 16 73 IPR001623 -
Apr3g1617 183 Gene3D DnaJ domain 12 135 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1617 Apr-Chr3 31580110 31588079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1617 16 82 C2H2 Transcription Factor Family AT1G74250 50.000 3.85e-13 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1617 3 31580110 31588079 Apr3g1617 3 31580110 31588079 ECH