Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1606 ATGGCGGTTTTACCTAGAAGCTCCTCCAGCTTGGAATTGACCATGTCTGTCCCAGGTTTTGCTTCTTCACCAACCCTTCCACTGTTTGGTATTACAGTGAAGGAATTGGACATAAACCAAGTACCTCTAGAAGAAGATTGGATGGCATCAAACATGGAAGACGAAGAAGAAAGCAGCAACGGAGACCCTCCCCGCAAGAAACTCCGTCTCACGAAGGAACAGTCCCGTCTCCTTGAAGAAAGCTTCAGACAAAACCACACTTTAAACCCAAAGCAGAAAGAGGCTTTGGCAATGCAACTGAAGCTGCGACCAAGGCAAGTGGAGGTGTGGTTTCAGAACCGTAGGGCCAGAAGCAAGCTGAAGCAGACAGAGATGGAGTGTGAGTACCTAAAGAGGTGGTTTGGGTCACTGACAGAGCAGAACCGAAGGCTTCAGCGGGAAGTTGAGGAACTGAGGGCTATGAAGGTGGGTCCACCCACTGTCATTTCTCCTCACACTTGCGAGCCACTCCCAGCATCCACACTCACCATGTGTCCCCGCTGTGAGCGCGTCACCACCACCGCCGACAAAGCCGCCACCGTCGCCGCCACTTTGTCCGCTAAAGTACCTTCGCCTTCCCTTCAATCTCGTCAACCTTCTGCGGCTTGTTGA 651 0.5207 MAVLPRSSSSLELTMSVPGFASSPTLPLFGITVKELDINQVPLEEDWMASNMEDEEESSNGDPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHTCEPLPASTLTMCPRCERVTTTADKAATVAATLSAKVPSPSLQSRQPSAAC* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1606 216 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Apr3g1606 216 Coils Coil 134 154 - -
Apr3g1606 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 197 - -
Apr3g1606 216 CDD homeodomain 64 122 IPR001356 GO:0003677
Apr3g1606 216 Pfam Homeodomain 65 119 IPR001356 GO:0003677
Apr3g1606 216 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Apr3g1606 216 SMART halz 121 164 IPR003106 GO:0006355|GO:0043565
Apr3g1606 216 Gene3D - 57 127 - -
Apr3g1606 216 PANTHER - 1 197 - -
Apr3g1606 216 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355|GO:0043565
Apr3g1606 216 SUPERFAMILY Homeodomain-like 50 122 IPR009057 -
Apr3g1606 216 SMART HOX_1 63 125 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1606 Apr-Chr3 31387025 31390698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1606 33 195 Homeobox Transcription Factor Family AT1G70920 63.095 1.42e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr3g1606 Homeodomain 2.9e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1606 3 31387025 31390698 Apr3g1606 3 31387025 31390698 ECH