Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1598 ATGAGCAAAAAGACGTGCAGAAGAAGGGGGGATCTTCAACTGGGTGAGATTCCATCACATCACACTCCACCAAACCGAAGATTGATTCCTCTTCCGCAAACGAGAAGAGGTAGTTTTGTTGATCGAGAAAAACAATGGATGATGAAGTTGTTCAGCGAGTGTTCCATGAAGGAGGACGCGATTACTTCCAACAGCAGCCTTCAACTTCTTCGTCTTCATCCTCCATCCTTCAATCTCTCCCTCTTCATGTGCTTAGCAGAAAAGGTGGCATCTGTTATTGGTTGTACTGTTATATCAATGGAGAATTATTGTGATGGAGTTGATGAGGGGAATGATCTGGATTCTATAGATTTTGATACCCTGATCAAGAATCTTGAGGATTTGACTAAAGGCAATGATACATTAATCCCAGAGTTTGACTACCAGCAGAAGAGACGTGTTGGCTATAAAACAATAAAGAGCGCTCCATCTGGGGTAATAGTTGATGGTACATATTCATTGCATGCAAAATTGCGGTCTTTACTGGATATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCCTGCTTTCTAAAGTTCGCTATGACATTGGAGATTCTTGTTCACTGGATTACCTTATAGATAGCATTTTTCCATTATTTAGGAAGCACATTGAGCCAGATCTTCATCATGCACAGATCAGAATTAATAACAGCTTTGTCTCATCATTCAGAGAAGCAATCTACAAGGTTAAATGCAGAAGTGAGTCTTCAGATGGACATTTTGGGTCTGCCTTTCAAGGAAATGAAGCTCAAACAGATAATTTTATCGAAATGTACCTTAGACCACCTTCGGCGAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCTGGAATTAGATATTATTTATCACTTGGTGACCAGAGGATTGTTGACAAGAATTTCATTATCAGGCCTAAAGCTGAGTTTGAGGTTGGTCGAATGACATTGGGTGGATTATTGGCACTTGGGTACACTGTTGTGGTTAGTTATAAACGTGCATCTACAACTGTCAATAATGGCAAGGTTTCAATGTCTTTTGAAACTATTGATGCTCTTGGTGAGAGATTCATGGTGATGAGAGGAACTAATAGAAAGACTGTTGGAACAGAAGCATTGGGGATGGGTATCAATGGACCTTGGATTACTAAATCATATCTGGAAATGATTCTTGAAAGAAAAGGTGTACCACGTCTTAGTACACCACCACTTGTGTCTAGTGCAACCGTGGCTGGTAATCAAGAAACAGCAATCATTGCACCAAAGCCAATTCGTGTTTCTCCTAACCTTGTTACTGGGCTTGAAGATTTATCTCAGCCGTGGACTCGATCCCCGACAAAATCTAAAATGGATCCTGTTATGGCTACGTGGCATTTCATACCTTCAGATTCCTCTCAGCCTGGCCATTCAGTCCTAGCAACCACAGATCCTTCATCTTTCAGGGATAGCATTAGGCTTGCTCCAATGCCTGATTCATATGACTTGGATAGGGGATTGCTTTTGGCAGTTCAAGCAATACAAGCTTTGTTAGAGAATAAAGGTGTCCCGGTCATAGTCGGAATTGGAGGTCCAAGTGGGTCTGGAAAGACTAGTTTGGCTCATAAAATGGCTAATATAATTGGTTGTGAAGTAGTTTCCCTGGAAAGCTATTATAAACAAGTAAAGGATTTTAAATATGATGATTTCAGCGCTCTTGATTTATCATTGCTATCAAAGAATATTGATGACATAAGAAACAGTCGAAGAACAAAAGTACCTCTATTTGACTTGGAAAGTGGTGCTCGGAGTGGTTTCAAGGAACTTGAAGTATCTGAAGATTGTGGAGTGATTATATTTGAAGGCGTCTATGCTTTGCATCCTGATATCCGAATATCACTTGACTTGTGGATTGCTGTGGTTGGAGGTGTTCATTCACATTTGATTTCACGAGTTCAAAGAGATAAGAGTAGAGTGGGATGTTTTATTTCCCAGAATGAGATCATGATGACAGTGTTTCCTATGTTCCAGCAGCTTATTGAACCTCATCTTGTTCATGCACATCTTAAAATTCGAAATGACTTTGACCCTGTGCTCTCTCCTGAGAGTTCATTATTTGTATTAAAGAGTAACAAAAAAGTAGCTTATCAAGATATTCTTGCAATTCTTGATCCAGCAAAATTTTGCAGTTCAGTGCAGAAATTTATTGATATTTACATAAGGCTTCCTGGGATCCCTTCCAATGGGCAGTTGAGAGATAGTGATTGTATTCGTGTCAGAATATGTGAAGGCAGATTTGCGTTACTGATACGGGAGCCTATCAGAGAAGGAAACTTCATCATTCAGCCTAAAGTGGATTTTGATATTAGCATCAGTACAGTTGCTGGTCTTCTTAATCTTGGGTATCAAGCAGTTGCTTATATTGAAGCATCTGCATTCATCTATCAGGATGGAAAGATTCTGATTGAGGTTGATCATCTACAAGATGTTCCTGGCCCATACATTCAAATAAAGGGTGTTAATAAAGATGCAGTGGCAACAGCAGGTTCAATGCTTAAATTGGATGGTTCATATACTACTAAGAGTTATCTTGATATAATCTTGGAAAGACTACCAGCAATAGAGAGAACTTCTGGTGGGATTCATTCTCAGCAATCAGCAAGGCTGCTAGAGATTGTTGAATTTATTCAATCTCAGGGGTGTAGTTCGGCTTCTGAATCCTCACCAAGCAGGTTAGTCTCTCCAATTGAAGGGATTGTTGAGGAGATGCAATCAAGGATTAGAAGACTTGAAAGGTGGCTTGCTATAAATACGGTTCTATGGACATTCCTGATGTCTGCCATTGTTGGTTATTCACTTTATCAAAGGAGGCGTCAATGA 2886 0.3999 MSKKTCRRRGDLQLGEIPSHHTPPNRRLIPLPQTRRGSFVDREKQWMMKLFSECSMKEDAITSNSSLQLLRLHPPSFNLSLFMCLAEKVASVIGCTVISMENYCDGVDEGNDLDSIDFDTLIKNLEDLTKGNDTLIPEFDYQQKRRVGYKTIKSAPSGVIVDGTYSLHAKLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSESSDGHFGSAFQGNEAQTDNFIEMYLRPPSASEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRASTTVNNGKVSMSFETIDALGERFMVMRGTNRKTVGTEALGMGINGPWITKSYLEMILERKGVPRLSTPPLVSSATVAGNQETAIIAPKPIRVSPNLVTGLEDLSQPWTRSPTKSKMDPVMATWHFIPSDSSQPGHSVLATTDPSSFRDSIRLAPMPDSYDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLESYYKQVKDFKYDDFSALDLSLLSKNIDDIRNSRRTKVPLFDLESGARSGFKELEVSEDCGVIIFEGVYALHPDIRISLDLWIAVVGGVHSHLISRVQRDKSRVGCFISQNEIMMTVFPMFQQLIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKKVAYQDILAILDPAKFCSSVQKFIDIYIRLPGIPSNGQLRDSDCIRVRICEGRFALLIREPIREGNFIIQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVPGPYIQIKGVNKDAVATAGSMLKLDGSYTTKSYLDIILERLPAIERTSGGIHSQQSARLLEIVEFIQSQGCSSASESSPSRLVSPIEGIVEEMQSRIRRLERWLAINTVLWTFLMSAIVGYSLYQRRRQ* 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1598 961 Gene3D - 525 702 IPR027417 -
Apr3g1598 961 SMART AAA_5 525 669 IPR003593 -
Apr3g1598 961 MobiDBLite consensus disorder prediction 1 15 - -
Apr3g1598 961 Gene3D - 84 249 IPR027417 -
Apr3g1598 961 CDD UMPK_like 85 232 - -
Apr3g1598 961 PANTHER URIDINE KINASE 479 612 - -
Apr3g1598 961 PANTHER URIDINE KINASE 613 952 - -
Apr3g1598 961 PANTHER URIDINE KINASE 83 426 - -
Apr3g1598 961 CDD UMPK_like 528 696 - -
Apr3g1598 961 SUPERFAMILY CYTH-like phosphatases 734 868 IPR033469 -
Apr3g1598 961 PRINTS Uridine kinase signature 526 543 - -
Apr3g1598 961 PRINTS Uridine kinase signature 553 564 - -
Apr3g1598 961 PRINTS Uridine kinase signature 647 657 - -
Apr3g1598 961 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 83 426 - -
Apr3g1598 961 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 479 612 - -
Apr3g1598 961 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 613 952 - -
Apr3g1598 961 Gene3D - 710 873 - -
Apr3g1598 961 MobiDBLite consensus disorder prediction 1 34 - -
Apr3g1598 961 Pfam Phosphoribulokinase / Uridine kinase family 528 693 IPR006083 GO:0005524|GO:0016301
Apr3g1598 961 Pfam Phosphoribulokinase / Uridine kinase family 114 229 IPR006083 GO:0005524|GO:0016301
Apr3g1598 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 514 696 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1598 Apr-Chr3 31192580 31223593 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1598 521 684 PRT Gene Family AT1G55810 25.843 6.71e-09 57.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1598 3 31192580 31223593 Apr3g1598 3 31192580 31223593 ECH
Apr3g1598 3 31192580 31223593 Apr9g2919 9 36021286 36039819 PCT