Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1587 ATGTCTGATTCATTCAGTAGTACCTTTCACTCTGCCACTCCAAATTCCCCACACAATTCCCATGCAGCCCCCAAAATCCCCACAATCTGCTCAATACCCCAACCTTATTGTATTTGCACCCACTGTAATCACATCCTCACCTTCAATCACCATGTTGGTAATGTAGCAGAACAAGGGACAAATAACACAGGGTCCCATGTACAGACCCAGCAAAGCACAAGGTGGAGTCCAACGCCAGTTCAATTACTAGTCCTTGAGGAATTGTATAGGCAAGGAACTAAAACACCATCAGCGGAACAAATCCAACAAATAGCTTCACAGTTGCGCCAGTTTGGGAAGATTGAAGGGAAGAACGTCTTCTACTGGTTTCAGAATCACAAGGCAAGAGAGAGACAGAAACGTCGTCGTAGGGAAATGGAGGAAAATGCAGCTTCTAATGAAGGGTTGAAAGAGACAGGTTGTGGAGTTAAAGAGACAAAGAAGTGGGCATCCACTTCAAACTGCAGTGGACATGCAGAGGAATCTGCAGTGCTGGATATAGCAGAAAAAGGATCTAGTGTGTGGACTCAATTTGAAGAGAGAGGCATACAAGTTTTGAGGAGAAACACAGCAGAAAGGCAAGCTAAGTGCCAAAATATGGAAATGCCTTGTTTCCCTCCCATTTCTATGGCAGTTCCTACAAGTTCAGCTGCACATAGAACACATAACACACAGCTTTTAACCCCCCAAAATTTCAATTTACCATCTGTACTAAACAGAGAAAGTTTCAACTATTATGATGAAGAAAATGCAGATCCTCGGACCCTAGACCTTTTTCCACTTAAAAGGGACGACCAAAATGGCATTTGTCTTGCTGAGAGAAAACCTATGTTCTGTGCCAATGCTTCTATGGACAGTGAAATCGCCTCCAACCAGTTTTTTGAGTTTCTTCCTTTAAGAAACTGA 945 0.4307 MSDSFSSTFHSATPNSPHNSHAAPKIPTICSIPQPYCICTHCNHILTFNHHVGNVAEQGTNNTGSHVQTQQSTRWSPTPVQLLVLEELYRQGTKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKRRRREMEENAASNEGLKETGCGVKETKKWASTSNCSGHAEESAVLDIAEKGSSVWTQFEERGIQVLRRNTAERQAKCQNMEMPCFPPISMAVPTSSAAHRTHNTQLLTPQNFNLPSVLNRESFNYYDEENADPRTLDLFPLKRDDQNGICLAERKPMFCANASMDSEIASNQFFEFLPLRN* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1587 314 SUPERFAMILY Homeodomain-like 67 135 IPR009057 -
Apr3g1587 314 ProSiteProfiles 'Homeobox' domain profile. 68 133 IPR001356 GO:0003677
Apr3g1587 314 SMART HOX_1 70 137 IPR001356 GO:0003677
Apr3g1587 314 CDD homeodomain 73 128 IPR001356 GO:0003677
Apr3g1587 314 MobiDBLite consensus disorder prediction 1 22 - -
Apr3g1587 314 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 20 314 IPR044555 GO:0003700|GO:0099402
Apr3g1587 314 Gene3D - 56 149 - -
Apr3g1587 314 Pfam Homeodomain 72 132 IPR001356 GO:0003677
Apr3g1587 314 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 20 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1587 Apr-Chr3 31017638 31019488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1587 24 314 Wox Gene Family AT3G18010 33.429 4.15e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Apr3g1587 Homeodomain 3.8e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1587 3 31017638 31019488 Apr3g1587 3 31017638 31019488 ECH