Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1553 ATGGGTCACAACCAGAACCAGAGATCGCTGATCTACGCCTTCGTTTCTCGTGGAACTGTGATTCTCGCTGAGTACACTGAATTCAGCGGCAACTTCAATTCCATCGCGTTTCAGTGCCTTCAGAAGCTTCCAGCTTCCAACAACAAATTCACTTACAACTGTGACGGCCACACCTTCAATTACCTCGTCGACAATGGCTTCACGTATTGTGTTGTTGCGGATGAATCGGTTGGAAGACAGGTGCCTGTGGCTTTTCTAGAGCGTGTGAAGGATGATTTTGTTGCCAAATATGGCGGTGGAAAGGCTGCTACAGCTGCTACTAACAGCCTCAATAAGGAATTTGGACCAAAACTGAAGGAACACATGCAGTACTGTATTGAGCACCCTGAAGAGATAAGCAAGCTTGCGAAGGTGAAAGCTCAGGTTTCTGAAGTTAAAGGTGTCATGATGGAGAACATTGAAAAGGTGCTGGACAGGGGAGAAAAGATAGAGCTTCTGGTTGACAAGACTGAGAATCTTCATCACCAGGCACAAGACTTCAGGAATTCGGGGACCAAAATCCGTAGAAAAATGTGGCTGCAAAACATGAAGATAAAGCTGATTGTATTGGCAATTTTGATAGCCCTGATTCTCATAATTGTCCTCTCTGTCTGCCGTGGGTTCAATTGTGGAAAATAA 678 0.4513 MGHNQNQRSLIYAFVSRGTVILAEYTEFSGNFNSIAFQCLQKLPASNNKFTYNCDGHTFNYLVDNGFTYCVVADESVGRQVPVAFLERVKDDFVAKYGGGKAATAATNSLNKEFGPKLKEHMQYCIEHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAQDFRNSGTKIRRKMWLQNMKIKLIVLAILIALILIIVLSVCRGFNCGK* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1553 225 SMART Longin_2 35 117 IPR010908 -
Apr3g1553 225 Gene3D Longin domain 1 131 - -
Apr3g1553 225 SUPERFAMILY SNARE fusion complex 129 196 - -
Apr3g1553 225 CDD Longin 11 125 IPR010908 -
Apr3g1553 225 Gene3D - 132 218 - -
Apr3g1553 225 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 134 194 IPR042855 -
Apr3g1553 225 SUPERFAMILY SNARE-like 10 125 IPR011012 -
Apr3g1553 225 Pfam Synaptobrevin 133 218 IPR042855 -
Apr3g1553 225 Pfam Regulated-SNARE-like domain 38 114 IPR010908 -
Apr3g1553 225 ProSitePatterns Synaptobrevin signature. 152 171 IPR001388 GO:0016021|GO:0016192
Apr3g1553 225 PRINTS Synaptobrevin signature 139 158 IPR001388 GO:0016021|GO:0016192
Apr3g1553 225 PRINTS Synaptobrevin signature 159 178 IPR001388 GO:0016021|GO:0016192
Apr3g1553 225 PRINTS Synaptobrevin signature 195 214 IPR001388 GO:0016021|GO:0016192
Apr3g1553 225 PANTHER SNARE PROTEINS 7 173 - -
Apr3g1553 225 PANTHER SYNAPTOBREVIN, LONGIN-LIKE DOMAIN PROTEIN-RELATED 7 173 - -
Apr3g1553 225 CDD R-SNARE 134 192 - -
Apr3g1553 225 ProSiteProfiles Longin domain profile. 14 118 IPR010908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1553 Apr-Chr3 30481287 30487448 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1553 3 30481287 30487448 Apr3g1553 3 30481287 30487448 ECH