Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1542 ATGGAGTTAGAGGTGAAAGTGGTGGGAGGCATAGACAACTGTTTCGCATCTCTTCCTCTGTCTCTAATCCAAACTCTTCAGTCCACGCGATCAACACCGCTTCCTCAAATTCTGGCTCTGGAGCTTCGCTCTCACACTCAGCCTCCACACTCGTGGTTCGTTGCTTGGTCCGGTGCCAGTTCTTCTTCTTCCGCCATAGAGGTTTCGACGCGATTTGCGGAGTGCGTTTCGTTGCCAAATCATGCTAGAGTTCAAGTCAGAGTTGCTTCTAATGTGCCACATGCTTCTCTGGTCACCGTAGAGCCACACACAGAAGATGACTGGGAAATCTTGGAGCTTAATTGTGACCAAGCTGAGGCTACACTCCTCAACCAGGTTAGGATTGTCCACGAAGGGATGAAATTTCCTTTGTGGTTGCATGGTCATACTGTCATCACATTCCAAGTGGATTCTGTTTTTCCGAAGAACGTGGTAGTGCAACTCAAGCCAGGAACTGAAGTTGCTGTTGCTCCAAAAAGACGCAAAAGAATTTCCTATTCAGCAGGAGATTCACATCTCTACTCCTGTAATAAAGAGCATACTGCTAAGATGCTGCTCCGTTTACAAGATCCAGATGGGTTATGTACTACCAGTACTCATTTCAAAGGAGTTGAGCTTCATATGGAGCTTACTTCTGTTGCTTTTGTTCACCCAGAAACAGCCAAACAATACTCATTCAACATGCTTCAGTTGGTTTCAATAATGCCCAGAGTGTCCAAGGAAAATGTTTTTTCCCAGACTAATATTATGAAAGCCAAAAATGGTTCAGCTACTAATGAAGTTGAGAATGGATATACGGACAAGAAAGAATATCAACAAGCAATTGTTCAGCTGTTGACTTCAGAATCTGTGGCTGAAGGACATGTGATGGTAGCAAAGTCTCTTCGCCTTTATTTGAGAGCTACCCTGCATTCATGGGTTTATTTGAAAGCATGTGATATTATTTTGGAAAAAAATATTCCTTCCATCTCTCTTTTTCCTTGTCAATTCAAACTGTTAAGGAAGGAGAATAATGCTGAGAAAGATGGTTTAGAAGTTTTTCGTGGCCCCAAGAATCACATTGATAAAAATTTGCATGCAAATGCTATGTCGGGTGTCTTTGTGGATACAATAGATTGGTCAATCCAAAATGAAGTTGTAGCAGCTCTTTCTGATGAATCTGATTACAATGCAGAGGAAGAGGCTACAAATCAGTCTCAGAATAAAAAAGGATTACAGAGTCTTGTACGACTATGGTATATTGCACAACTTAAGGCAATTACTTCGATTACGGGTATGGAGGTTAGTTCATTGGTTTTGGGTAATAAAACCTTGCTTCAATTTGAATTAAGCTGTTGCAAACTTGCAAGTAATGGGAAGGTTCAGCCAGCCTATAATTCTTCAGAGAACAGTGGCAAGACAGCTGAAATGTTATTTTTATTGAACATTGGTGAAGAATATCTGCATCATGGGAAACTTAATGCATATGAAGTTGCTCTTGGTGAAAGACTCAATAACATCAATATTGGGGATCTGAAGCTTTTTGAAAGGATAAAGTATGGCAATCCTGTGTCTATTCATTCTATAGAAGAGAGAGCCTCTGAAGACCACAGTAGTTCAAATGTATCTTCCCTTGGCTGGATGGAGAAAACTGCTTCTGATGTTATCAACAGGATGTTGATATTGTTATGTTCAGCATCTGGTTTGTGGTTTGGCTCACACAACTTGCCACTCCCTGGACATGTTCTAATATATGGACCTCCGGGCTCTGGGAAAACTATATTAGCAAGGACTGTGGCAAAATCCCTTGAGAATCGTGAAGACATCTTAGCACACATGATTTTTGTTTCCTGCTCAAAACTTGCCCTGGAGAAGGTCCCAATTATTCGCCAAGAACTTGCAAACCATGTAACTGAAGCTTTAAATCATGCTCCTTCGGTTGTTATCTTTGATGATCTTGATAGCATAATTTCTAACCCCGACTCTGAAGGACCTCAGCCTTCAATGTCTGTCACTGGACTTGCAGATTTTCTGGTTGACATCATGGATGAATATGGGGAGAAGAGGCGAAGATCATGTGGATTTGGACCAACAGCCTTCATAGCTTGCATACAATCCCTAGAGAAGATACCACAATCTTTGAGTTCTTCAGGACGTTTTGACTTTCACATAAAGCTGCCTGCTCCTGCAGCTTCTGAGCGCAGGGCTATGTTGAAGAATGAAATACAAAGGCGTCACTTGCAGTGCAATGATGACATCCTGCTTGATGTGGCTGTAAAATGTGATGGTTATGATGGTTATGATCTGGAAATATTGGTTGACAGAACTGTCCATGCTGCTGTCCGCCGTTTTTTGCCATCTAATGTGGCCATTTATGGGCAAGAGAGTCCTGCTTTACTAAGGGAGGATTTCTCTCTGGCAATGCATGATTTTCTTCCAGTTGCAATGCGTGATATCACAAAATATGCTTCTGATGATGGCCGTTCAGGATGGGATGATGTGGGTGGTCTTGTAGATATTCAAAATGCTATCAAGGAGATGATAGAGTTGCCATCAAAGTTTCCAGAAACTTTTGCACAAGCACCTTTGAGGTTACGGTCAAATGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAGACTCACATAGTTGGTGCTGCTGCTGCTGCTTCTTCGCTTCGATTCATATCAGTTAAAGGGCCAGAGCTGTTAAACAAGTACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTCTCTAAAGCAGCTGCTGCAGCTCCATGCCTACTTTTTTTTGATGAATTTGATTCTATTGCCCCCAAGAGGGGGCATGACAATACTGGAGTAACTGATCGTGTTGTTAATCAATTTCTGACTGAGTTAGATGGTGTTGAAATTTTAACTGGTGTGTTTGTGTTTGCTGCAACCAGTAGACCAGATTTGCTTGATGCAGCGCTGTTGAGACCTGGTAGGTTAGATCGTCTTCTGTTCTGTGACTTTCCATCTTGGCATGAGAGATTGGAAATTCTAACAGTACTTTCTAGAAAGCTACCCATGGCCAATGATATTGATTTGGCTACAATAGCTAATATTACTGAGGGATTTAGTGGAGCTGATCTCCAAGCTCTCCTCTCAGATGCACAGCTTGCAGCAGTTCATGATGTTCTAGACAATGTGGATGCCTCTAGGCCAGATAAAACACCAGTTATTACTGATGCTCTTCTGAAGTTCACAGCATCCAAGGCTAGACCATCTGTTTCAGAAGAAGAGAAGAGAAGACTCTACAGTATATATCGTCAGTTCCTGGATTCAAAGAGATCCGTTGCTGCCCAGTCAAGGGATGCAAAAGGCAAGAGGGCAACTCTAGCTTGA 3387 0.4213 MELEVKVVGGIDNCFASLPLSLIQTLQSTRSTPLPQILALELRSHTQPPHSWFVAWSGASSSSSAIEVSTRFAECVSLPNHARVQVRVASNVPHASLVTVEPHTEDDWEILELNCDQAEATLLNQVRIVHEGMKFPLWLHGHTVITFQVDSVFPKNVVVQLKPGTEVAVAPKRRKRISYSAGDSHLYSCNKEHTAKMLLRLQDPDGLCTTSTHFKGVELHMELTSVAFVHPETAKQYSFNMLQLVSIMPRVSKENVFSQTNIMKAKNGSATNEVENGYTDKKEYQQAIVQLLTSESVAEGHVMVAKSLRLYLRATLHSWVYLKACDIILEKNIPSISLFPCQFKLLRKENNAEKDGLEVFRGPKNHIDKNLHANAMSGVFVDTIDWSIQNEVVAALSDESDYNAEEEATNQSQNKKGLQSLVRLWYIAQLKAITSITGMEVSSLVLGNKTLLQFELSCCKLASNGKVQPAYNSSENSGKTAEMLFLLNIGEEYLHHGKLNAYEVALGERLNNINIGDLKLFERIKYGNPVSIHSIEERASEDHSSSNVSSLGWMEKTASDVINRMLILLCSASGLWFGSHNLPLPGHVLIYGPPGSGKTILARTVAKSLENREDILAHMIFVSCSKLALEKVPIIRQELANHVTEALNHAPSVVIFDDLDSIISNPDSEGPQPSMSVTGLADFLVDIMDEYGEKRRRSCGFGPTAFIACIQSLEKIPQSLSSSGRFDFHIKLPAPAASERRAMLKNEIQRRHLQCNDDILLDVAVKCDGYDGYDLEILVDRTVHAAVRRFLPSNVAIYGQESPALLREDFSLAMHDFLPVAMRDITKYASDDGRSGWDDVGGLVDIQNAIKEMIELPSKFPETFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEILTVLSRKLPMANDIDLATIANITEGFSGADLQALLSDAQLAAVHDVLDNVDASRPDKTPVITDALLKFTASKARPSVSEEEKRRLYSIYRQFLDSKRSVAAQSRDAKGKRATLA* 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1542 1128 CDD AAA 867 1004 - -
Apr3g1542 1128 Pfam AAA+ lid domain 1027 1065 IPR041569 -
Apr3g1542 1128 Pfam ATPase family associated with various cellular activities (AAA) 588 733 IPR003959 GO:0005524|GO:0016887
Apr3g1542 1128 Pfam ATPase family associated with various cellular activities (AAA) 875 1002 IPR003959 GO:0005524|GO:0016887
Apr3g1542 1128 Pfam Peroxisome biogenesis factor 1, N-terminal 98 171 IPR015342 GO:0005524|GO:0005777|GO:0007031
Apr3g1542 1128 Gene3D - 92 172 - -
Apr3g1542 1128 Gene3D - 736 831 - -
Apr3g1542 1128 Gene3D - 836 1098 IPR027417 -
Apr3g1542 1128 ProSitePatterns AAA-protein family signature. 975 993 IPR003960 GO:0005524|GO:0016887
Apr3g1542 1128 SUPERFAMILY ADC-like 10 90 IPR009010 -
Apr3g1542 1128 CDD AAA 582 733 - -
Apr3g1542 1128 PANTHER AAA-FAMILY ATPASE 3 1125 - -
Apr3g1542 1128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 569 813 IPR027417 -
Apr3g1542 1128 Gene3D - 1006 1085 - -
Apr3g1542 1128 PANTHER - 3 1125 - -
Apr3g1542 1128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 837 1099 IPR027417 -
Apr3g1542 1128 SMART AAA_5 584 736 IPR003593 -
Apr3g1542 1128 SMART AAA_5 871 1007 IPR003593 -
Apr3g1542 1128 Gene3D - 533 735 IPR027417 -
Apr3g1542 1128 SUPERFAMILY Cdc48 domain 2-like 93 171 IPR029067 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1542 Apr-Chr3 30264965 30282162 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1542 3 30264965 30282162 Apr3g1542 3 30264965 30282162 ECH