Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1526 ATGGCAGTAACTGATGGATCCCCAACCCCTCAGATGGTTGGCAATGCTTTTGTGGAGCAGTATTACTCTATACTGCATCAAGATCCAGACCAAGTTCACAGATTTTACCATGAGTCTAGTGTCCTAAGTCGACCTGAAGAAGATGGATCCATGACCACAGTGACTACTACTGCAGATATTAATAAAAAGATACTTTCTCTGGATTACACAAGCTTTAGGGTAGAGATTCTGAGTGCTGATGCTCAGCCTTCATACAAGGATGGGGTGATGGTTGTAGTTACTGGCTGCTTGATGGGAAGTGACAATCTGAAAAGGAAGTTTAGCCAGTCCTTTTTCCTAGCTCCACAGGACAAAGGCTACTTTGTTTTGAATGATGTTTTCAGATACATTGATGAGTATAAGTCAATTGATATTGAATCTGTGCCTGCAAATGATGCTGATGAAAGTTCTCCAACAGATTCTTTTACCCCAGAGCCTGAGGCCATTCATGTTCCTGAAGACACTCCACCTAGTCAAACTGCCATTGTTGATGCTGACAATACTGTCAGCAAAGAAGTGAGTCAGCCAGTGGAGAATGGAAAATTGTCAGTTACTGAAACAGTGGTTCCTGTTAATCATGTTAAAGAATCCAATCATCAGGAACATCACTCACACACTGAGAAAGCTGCTTCTAATACACAGGAGGATGCTCCCAAGAAGTCTTTTGCATCCATTGTTAATGCACTGAAAGATAATGCTGCTCCTTTCCATATCAGGACTTCCCCTGTGAAAACTGTTGAACAACCCCGTGTTTCTAGCGTGCCTGTATCAGAAGTGCCAGCTACTAGCACTGACAGTCCAACAGAAAAGAGTAATGAGAATGCAGGCAAGGCTTATGCAATATTTGTTGCAAATTTGCCTATGAATGCAACAGTAGAGCAGCTGGAACGAGTTTTCAAGAAATTTGGGCCCATTAAACCTGATGGTATTCAAGTTAGAAGTAATAAGGGATCTTGTTTTGGTTTTGTGGAATTTGAATCTGCTACTTCAATGCAAAGTGCACTTGAGGCCTCTCCTCCGGTTACATTGGACAATCGAAGGCTTTCCATTGAAGAAAGGCGAGGTATGGGTGGATTCCGAAATGACAGAAATGATAACTTCAGGGGCCGTGGCAACTTTGGTGGTGGCCGTGGTGGCGGTGGTGGCTATCCAAATAGGAATGATTTTGAGAAGCGAAGTGAGTTCTCTGGCCGGCCTCGAGGAGGCAATAATGCTGGGCGTAGCAATGGAGAAACTATGCCAAGGAGTTTTCAGAATGGAGGAAAAGTTGCTCGTCAACCAGTGAAAGTTCAGTGA 1335 0.4352 MAVTDGSPTPQMVGNAFVEQYYSILHQDPDQVHRFYHESSVLSRPEEDGSMTTVTTTADINKKILSLDYTSFRVEILSADAQPSYKDGVMVVVTGCLMGSDNLKRKFSQSFFLAPQDKGYFVLNDVFRYIDEYKSIDIESVPANDADESSPTDSFTPEPEAIHVPEDTPPSQTAIVDADNTVSKEVSQPVENGKLSVTETVVPVNHVKESNHQEHHSHTEKAASNTQEDAPKKSFASIVNALKDNAAPFHIRTSPVKTVEQPRVSSVPVSEVPATSTDSPTEKSNENAGKAYAIFVANLPMNATVEQLERVFKKFGPIKPDGIQVRSNKGSCFGFVEFESATSMQSALEASPPVTLDNRRLSIEERRGMGGFRNDRNDNFRGRGNFGGGRGGGGGYPNRNDFEKRSEFSGRPRGGNNAGRSNGETMPRSFQNGGKVARQPVKVQ* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1526 444 SUPERFAMILY RNA-binding domain, RBD 289 397 IPR035979 GO:0003676
Apr3g1526 444 ProSiteProfiles Nuclear transport factor 2 domain profile. 13 129 IPR018222 -
Apr3g1526 444 MobiDBLite consensus disorder prediction 415 429 - -
Apr3g1526 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 368 IPR000504 GO:0003723
Apr3g1526 444 MobiDBLite consensus disorder prediction 209 227 - -
Apr3g1526 444 MobiDBLite consensus disorder prediction 209 232 - -
Apr3g1526 444 MobiDBLite consensus disorder prediction 369 444 - -
Apr3g1526 444 PANTHER BNAA02G14660D PROTEIN 7 416 - -
Apr3g1526 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 361 IPR000504 GO:0003723
Apr3g1526 444 MobiDBLite consensus disorder prediction 253 285 - -
Apr3g1526 444 Gene3D - 2 134 - -
Apr3g1526 444 CDD RRM_SF 294 364 - -
Apr3g1526 444 SUPERFAMILY NTF2-like 9 130 IPR032710 -
Apr3g1526 444 Pfam Nuclear transport factor 2 (NTF2) domain 13 129 IPR002075 -
Apr3g1526 444 Gene3D - 279 409 IPR012677 -
Apr3g1526 444 SMART rrm1_1 293 364 IPR000504 GO:0003723
Apr3g1526 444 CDD NTF2 9 131 IPR018222 -
Apr3g1526 444 MobiDBLite consensus disorder prediction 141 172 - -
Apr3g1526 444 MobiDBLite consensus disorder prediction 258 285 - -
Apr3g1526 444 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 7 416 IPR039539 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1526 Apr-Chr3 30068777 30073750 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1526 3 30068777 30073750 Apr3g1526 3 30068777 30073750 ECH