Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1517 ATGGTGAAGATTTGTTGCATTGGAGCTGGGTATGTTGGTGGACCCACCATGGCTGTGATTGCATTGAAATGTCCCAAGGTTACAGTAACGGTAGTGGACATATCTTCTCAGCGAATCAATGCATGGAACAGCGATCACCTTCCCATATATGAGCCTGGCCTTGATGAGGTGGTGAAGGAGTGCAGAGGGAAGAACCTTTTCTTCAGCACTGATGTGGAGAAACACGTTTCAGAGGCTGATATAGTCTTTGTTTCTGTAAACACCCCAACAAAAACTCATGGCCTTGGAGCTGGCAAAGCAGCTGATTTGACATACTGGGAGAGTGCTGCTAGAATGATTGCTGATGTTTCAAAATCAGACAAAATTGTGGTGGAAAAATCAACTGTTCCTGTGAAAACAGCAGAAGCAATTGAGAGGATTCTGACTCATAATAACAAAGGCATCAATTTCACTATTCTTTCAAACCCAGAATTTCTTGCTGAAGGCACAGCAATTCAAGACCTTTTCAATCCAGATAGAGTCCTTATTGGAGGGAGGGAGACCCCAGATGGGCAAAAAGCCATAGAAGCTCTGAAAAATGTGTATGCTAATTGGGTACCTGTGGAGAGAATCCTTTGCACCAATTTGTGGTCTGCTGAACTCTCAAAGCTTGCTGCCAATGCTTTTCTGGCACAGAGAATCTCTTCTGTGAATGCCATGTCAGCATTATGTGAGGCAACTGGTGCTGATGTATCCCAGGTGTCACACTCTGTTGGGACAGACTCAAGGATTGGACCAAAGTTCTTGAATGCTAGTGTTGGTTTTGGTGGCTCTTGCTTTCAGAAGGACATATTGAACTTGGTGTATATCTGTGAGTGTAATGGCCTTCCTGAGGTGGCAAATTACTGGAAGCAAGTCATTAAGGTGAATGATTACCAGAAAACAAGGTTTGTGAACAGGGTTGTTTCCTCTATGTTCAACACAGTTTCAGCTAAAAAGATTGCTATTCTGGGTTTTGCTTTCAAGAAGGACACCGGTGACACTAGGGAAACCCCAGCAATTGATGTGTGTAAAGGACTTTTGGGAGACAAAGCTAGGTTGAGCATATATGATCCTCAGGTTACTGAAGACCAAATCACAAAGGATCTCTCAATGAGGAAGTTTGATAAGGACCACCCTGCTCATCTTCAACCACCTAGCCCCACATCTATAAAGCAAGTATCTGTGGTTTGGGATGCTTATGAGGCAGTGAAAGATGCACATGGAATTTGCATTATGACCGAGTGGGATGAGTTCAAGAAGCTTGATTACCAAAAGGTTTTTGACAGCATGCAGAAGCCAGCATTTGTTTTTGATGGCCGGAATATTGTGGATGTTAAGAAGCTCAGGGAAATTGGATTTATAGTTTATTCCATCGGCAAGCCACTTGATCCATGGCTCAAGGACATGCCTGCAGTGGCTTAA 1443 0.4352 MVKICCIGAGYVGGPTMAVIALKCPKVTVTVVDISSQRINAWNSDHLPIYEPGLDEVVKECRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTHGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIERILTHNNKGINFTILSNPEFLAEGTAIQDLFNPDRVLIGGRETPDGQKAIEALKNVYANWVPVERILCTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSSMFNTVSAKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQITKDLSMRKFDKDHPAHLQPPSPTSIKQVSVVWDAYEAVKDAHGICIMTEWDEFKKLDYQKVFDSMQKPAFVFDGRNIVDVKKLREIGFIVYSIGKPLDPWLKDMPAVA* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1517 480 Gene3D - 1 208 - -
Apr3g1517 480 Gene3D - 209 240 - -
Apr3g1517 480 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 214 IPR036291 -
Apr3g1517 480 PIRSF UDPglc_GDPman_dh 2 467 IPR017476 GO:0016616
Apr3g1517 480 PIRSF UDPglc_DH_euk 1 480 IPR028356 GO:0003979
Apr3g1517 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616|GO:0051287
Apr3g1517 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 186 IPR001732 GO:0016616|GO:0051287
Apr3g1517 480 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 315 463 IPR036220 -
Apr3g1517 480 Gene3D - 241 477 - -
Apr3g1517 480 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Apr3g1517 480 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 480 IPR028356 GO:0003979
Apr3g1517 480 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 1 1 480 - -
Apr3g1517 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 451 IPR014027 GO:0016616|GO:0051287
Apr3g1517 480 SMART UDPG_MGDP_dh_C_a_2_a 328 452 IPR014027 GO:0016616|GO:0051287
Apr3g1517 480 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 3 448 IPR017476 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1517 Apr-Chr3 29959320 29961499 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1517 3 29959320 29961499 Apr3g1517 3 29959320 29961499 ECH
Apr3g1517 3 29959320 29961499 Apr6g0247 6 2569886 2572738 ECH
Apr3g1517 3 29959320 29961499 Apr7g1420 7 21302296 21305032 PCT