Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1471 ATGGTTTTCTCCTCTATTCCAGTCTTTGTAGATCCTCCCAATTGGCAGCAGCAACCAAACCATCCTCAAGCAAATGGCAGTGATAGCACTCAGCTTCTTCCACCTTTGCCTCCACAGCAACCTGATATGGGAGGTTCTGTGGGTTCAATCAGGCCAGGGTCTATGGCAGATCGAGCTAGGCTAGCTAAGATACCACCACCTGAAGCAGCTCTCAAGTGTCCACGTTGTGAATCCACCAACACTAAATTTTGCTACTTCAATAACTATAGCCTCACTCAACCACGCCACTTCTGCAAGACTTGTAGACGCTATTGGACAAGAGGGGGTGCTCTTAGAAATGTTCCTGTGGGTGGAGGGTGTCGCAGGAACAAGAAGAACAAAAGGAGTCGCTCTAAATCTCCTGCATCCACTGAGAAACAAACACTTTCTAGTTCCACAAGTGCAATACCCTCTGGTGGAACCACTCATGAGCTTATTGGTCACTTGCCACAACCAACTAACCTTCCTTTCATGGCATCTCTTCATCAGAACCTGAACCGTTATGCTGTTGGAAACATGGGTCTCGGCTTGCGTGAGATCCATGGACAGAACGATCACATGGGGTTTCAAATTGGTGGTGCCGGTAATTCAGCTGCAGGTGGAGGAATGGATCAGTGGCGCTTGCAGCAGATTTCTTTCTTGAATGGTTTTGAATCAACTTCAGCTGTGTCATACCCTTTTCAAAGTGAAAGTATTGAAACACCTTCTGGTTTGGTTGGAGATATAGCAACGACTTCTAGGGTTTCTCCGCTGCCACCAGTTAAAATGGAAGAAACTGCAGCGTTAAATTTGTCAAGATCACCACTCAGTGTCTCAGAAAATAACCAATTCTATTCATGGACTGATATGTCAGGTCTTGCCTCTTCTTCCACTAGTCATCTCTTGTAA 927 0.4595 MVFSSIPVFVDPPNWQQQPNHPQANGSDSTQLLPPLPPQQPDMGGSVGSIRPGSMADRARLAKIPPPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPASTEKQTLSSSTSAIPSGGTTHELIGHLPQPTNLPFMASLHQNLNRYAVGNMGLGLREIHGQNDHMGFQIGGAGNSAAGGGMDQWRLQQISFLNGFESTSAVSYPFQSESIETPSGLVGDIATTSRVSPLPPVKMEETAALNLSRSPLSVSENNQFYSWTDMSGLASSSTSHLL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1471 308 MobiDBLite consensus disorder prediction 135 153 - -
Apr3g1471 308 Pfam Dof domain, zinc finger 70 125 IPR003851 GO:0003677|GO:0006355
Apr3g1471 308 MobiDBLite consensus disorder prediction 11 53 - -
Apr3g1471 308 ProSiteProfiles Zinc finger Dof-type profile. 71 125 IPR003851 GO:0003677|GO:0006355
Apr3g1471 308 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 305 IPR045174 GO:0003700|GO:0006355
Apr3g1471 308 MobiDBLite consensus disorder prediction 115 162 - -
Apr3g1471 308 MobiDBLite consensus disorder prediction 11 33 - -
Apr3g1471 308 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 305 - -
Apr3g1471 308 ProSitePatterns Zinc finger Dof-type signature. 73 109 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1471 Apr-Chr3 29321649 29324698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1471 1 127 C2C2-Dof Transcription Factor Family AT2G37590 62.759 1.48e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr3g1471 zf-Dof 3.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1471 - - gmx:100816635 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1471 3 29321649 29324698 Apr3g1471 3 29321649 29324698 ECH
Apr2g2286 2 27884570 27888838 Apr3g1471 3 29321649 29324698 PCT