Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g1404 ATGGATCCTTCTAGTGGACAACACCAGCAAATGTCTAGCCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCACAACAGGAGAGGAAGCCAAGGCCTCAGCCCGAGCAAGCTCTAAAGTGCCCAAGATGTGACTCAACCAACACCAAATTTTGTTACTACAACAATTACAGCCTTTCTCAGCCAAGGTATTTCTGCAAGTCTTGTAGGAGATATTGGACAAAAGGAGGGACACTGAGGAATGTTCCTGTGGGTGGAGGGTGCAGGAAGAACAAGAGATCATCATCTTCATCATCAAAGAGGGTTCAAGATCAACAATTCACACCCAACCCACTCACTGGCCTCCCTCCATTGTCTTATGATACCAATGATCTCACCCTTGCATTAGCAAGGCTCCAAAAGCAGTCATGTGGGCAATTGGGTTATGATGAACATGATCTTTCAATTTTGACAAGCAACCCATGTGATATCCTTGGCAATCCTGGCATGAACCCCTCATCCACAAACCCTGGATTCTTGGATGCACTTAGAAGTGGGTTCCTTGGAACCCAAAGTAACATGCAGAATCTGTACTACGGATATGGGAATGGGGACATGGGAGAGGTGGACAATGGCAATGCTTGTGGGGTTGGAGTTAGTGGAGAGATGCTGCTGCCTTATGATCAAGAAATGAGTGTTGCCACCACTCAGGCAGTGACGGTCACTACCATGAAACAAGAACTTTGCAATGGAAGAGAACAAAGTGAAAGTAGGGTGTTGTGGGGTTTCCCTTGGCAGCTCAATGGAGACACAAACATGGGTGAACTTGACTCAGGAAGAGCTAGTTGGAATGGAATCACTTCATCTTGGCATGGACTTCTCAATAGCCCCCTAATGTAG 879 0.463 MDPSSGQHQQMSSQSLENMLACSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSKRVQDQQFTPNPLTGLPPLSYDTNDLTLALARLQKQSCGQLGYDEHDLSILTSNPCDILGNPGMNPSSTNPGFLDALRSGFLGTQSNMQNLYYGYGNGDMGEVDNGNACGVGVSGEMLLPYDQEMSVATTQAVTVTTMKQELCNGREQSESRVLWGFPWQLNGDTNMGELDSGRASWNGITSSWHGLLNSPLM* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g1404 292 MobiDBLite consensus disorder prediction 1 40 - -
Apr3g1404 292 MobiDBLite consensus disorder prediction 90 118 - -
Apr3g1404 292 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Apr3g1404 292 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 291 IPR045174 GO:0003700|GO:0006355
Apr3g1404 292 MobiDBLite consensus disorder prediction 1 22 - -
Apr3g1404 292 MobiDBLite consensus disorder prediction 84 118 - -
Apr3g1404 292 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Apr3g1404 292 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 7 291 - -
Apr3g1404 292 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g1404 Apr-Chr3 28489298 28491241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g1404 1 292 C2C2-Dof Transcription Factor Family AT2G28510 39.264 1.06e-54 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr3g1404 zf-Dof 5.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g1404 - - gmx:100799737 466.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1404 3 28489298 28491241 Apr3g1404 3 28489298 28491241 ECH
Apr2g2233 2 27427522 27430063 Apr3g1404 3 28489298 28491241 PCT