Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0993 ATGAGGAGCAGCGGAGGAGAGATTGTTCAAGTAGAAGGAGGGCACATTATTAAGTCCACAGGTAGAAAAGATCGCCACAGCAAGGTTTACACTTCCAAAGGGCCACGTGATAGAAGAGTTAGGCTTTCAGCACACACAGCCATCGAGTTCTATGATGTTCAAGATCGTCTTGGCTATGACAGACCCAGCAAGGCCGTGGATTGGCTCATCAAAAAGGCAAAACCTTCCATTGACAAGCTTGCTGAGCTTCCTCCTTTTCATCCAAGTACTAATGAGGAAGACCAAAATAATGCTGCAGGCTCAAGTACCATCATGACCATTGCACAAGAACAACAACAACATTCAGAGTCTTGTGGTTACAACTTTCAGCTCCAAAGGCAATTAGGTGCATTCATTTCACCCCAAGTTGACACTGACCCTATTGCTTTGTTTCCCACAACCTCTACTACCTCCTCCATCAATTTTCAAAACAACAACCCTACACAAAACCTTGGCCTATCTCTCCATTGTTTCCAAGACCACCCTGGTCTCATTCATTGGCAGTCACAACAAGATGGTGCAAATCAAACACCTCCTTCAAATGAACACCAAATTCAAACCCTTTTTGGCTCAACCCCTATTGGGTTCGAGAATGAAAACCAATACCACAGAATTGTGACTTTGAACAATGAAGCAGCAGCAGCAGCAGCAACAACTACAACAACAACCACTGATCATGTTAACAGATTGGGGTTCATGCTCAACTCACAGCCATTTCTAGGCCATGGTTCTGCTTCAGTATATTCTCAAAGTGGGACCCTTCAGTCCAATTTCTCATTTCCAATGACTTCCTCTGAGCATCACAGGTCCCCACCAATTCACCAAGCTTCCATCTTTGGTAGCAGATTTGTGTCTGACGGATTAGCTGGGTTCTGCATTCCAGATAGAATTCAAGGTGTTGAAGAGAATCATGAAATTGCTTCCAATGGGCCTTCTTCTTCTTCTCCTAGTTCTATCCATTGA 1002 0.4411 MRSSGGEIVQVEGGHIIKSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKPSIDKLAELPPFHPSTNEEDQNNAAGSSTIMTIAQEQQQHSESCGYNFQLQRQLGAFISPQVDTDPIALFPTTSTTSSINFQNNNPTQNLGLSLHCFQDHPGLIHWQSQQDGANQTPPSNEHQIQTLFGSTPIGFENENQYHRIVTLNNEAAAAAATTTTTTTDHVNRLGFMLNSQPFLGHGSASVYSQSGTLQSNFSFPMTSSEHHRSPPIHQASIFGSRFVSDGLAGFCIPDRIQGVEENHEIASNGPSSSSPSSIH* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0993 333 Pfam TCP family transcription factor 21 114 IPR017887 -
Apr3g0993 333 PANTHER TRANSCRIPTION FACTOR TCP4 3 332 - -
Apr3g0993 333 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 3 332 IPR005333 GO:0003700
Apr3g0993 333 ProSiteProfiles TCP domain profile. 22 80 IPR017887 -
Apr3g0993 333 MobiDBLite consensus disorder prediction 17 37 - -
Apr3g0993 333 MobiDBLite consensus disorder prediction 1 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0993 Apr-Chr3 24783493 24787425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0993 6 333 TCP Transcription Factor Family AT1G53230 39.578 1.04e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Apr3g0993 TCP 1.3e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0993 3 24783493 24787425 Apr3g0993 3 24783493 24787425 ECH
Apr3g0993 3 24783493 24787425 Apr2g0440 2 5106308 5109916 ECH
Apr3g0993 3 24783493 24787425 Apr5g0149 5 1296261 1299293 ECH
Apr2g0440 2 5106308 5109916 Apr3g0993 3 24783493 24787425 ECH
Apr5g0149 5 1296261 1299293 Apr3g0993 3 24783493 24787425 ECH
Apr2g1876 2 24315581 24318917 Apr3g0993 3 24783493 24787425 ECH