Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0924 ATGTCAGAGGTTAAAGACCCAGCGATAAAGCTTTTTGGGAGGACAATTTCTCTGCCACGCACCCCTAGTGATTCTCCTGCACCCGCACCTGTCACATGTCCTTCTTCTTCCTCTTCTCCCCGTGAAGTGAGCTCTGCAACACACCACCAAGCAGAGGAACCATCAAGGAAAGAACTCACCTCAGTACAAGATGATGATGCCTCACATCAAACCACAGAGGATTTAAAATCTCCCACAACATCTTCAGGCATATGTGAGAATCCTAAGACACCCTCCGCTGACACTGAGACATCGTTACTGAAATCCTCTACAAATGGAGAACAAAGTGAAACTAGTGCTTCTGAAGAAAAAACTCCAAAGAAACCTGACAAGGTAATTCCATGCCCACGATGCAATAGCATGGATACCAAATTCTGTTACTACAACAATTACAATGTCAAGCAACCCCGCCATTTCTGCAAGAACTGTCAAAGATATTGGACTGCAGGAGGAACAATGAGAAATGTGCCTGTGGGAGCTGGTCGCCGCAAGAACAAAAACACTTCGGCATCACATTACCGGCACATAATGGTTCCAGAGGCACTCCAAGGAGTTAAACTCAATGCACCCAATGGCTTGCATAATTCTGTTTTAGGAAATGGAGCAGCTGTCTTGACTTTTGGTCCAGACTCTCCACTTTGTGATACCATGGCTTCTGTATTGAACATTGCTGAGAGAACACAAAATTGTGTTCCAAATGGGTTTCATGCAACAGAACCAAATACTTTTGTTGCTTCTCATAGTAAGGAAGATGAGGGGGGTGATCACTCTACTGGATCACGTGAATCAGTGGATAAAAGGGTTGAAGGTTTTACTCCTCAATTACCATACTTCCCAAATTCCCCTTGGCCTTATCCTTGGAATTCTACAATGCCTCCTCCTACATTTTGCCCACCAGGCTATCCTTTATCTTTCTATACCACACCTGCATATTGGGGTTGTATGCCACCCTCTTGGAATATATCATGTATCTCACCCCAATCTTCTGTTAACCACTCTATCTCTGCCACTAGCTCTGGCACCAATTCAACTACTTTGGGGAAACACTCGAGGGATGGGAACATAATCACCCTAGCTAACTCACAAGAAGAAAAGCTTGACATAGAACATAACACTTCAGAAAACAATGCCATGATCCCCAAGACTCTTAGAATTGATGACCCTAGTGAAGCTGCAAACAGTTCCATTTGGTCAAAGCTAGGGGTCAAGAATGACAAGGCAAATTCTCTCAGTGGAGGAGGTCTATTCAAAGCATTTTCATCCAAGAGAAATGACATGAATCACATGGTTGAAACATCACCAGTTTTGCAAGCCAACCCTGCGGCTTTATCGCGGTCTCTTAGCTTCCATGAACGGACCTAA 1401 0.4418 MSEVKDPAIKLFGRTISLPRTPSDSPAPAPVTCPSSSSSPREVSSATHHQAEEPSRKELTSVQDDDASHQTTEDLKSPTTSSGICENPKTPSADTETSLLKSSTNGEQSETSASEEKTPKKPDKVIPCPRCNSMDTKFCYYNNYNVKQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNTSASHYRHIMVPEALQGVKLNAPNGLHNSVLGNGAAVLTFGPDSPLCDTMASVLNIAERTQNCVPNGFHATEPNTFVASHSKEDEGGDHSTGSRESVDKRVEGFTPQLPYFPNSPWPYPWNSTMPPPTFCPPGYPLSFYTTPAYWGCMPPSWNISCISPQSSVNHSISATSSGTNSTTLGKHSRDGNIITLANSQEEKLDIEHNTSENNAMIPKTLRIDDPSEAANSSIWSKLGVKNDKANSLSGGGLFKAFSSKRNDMNHMVETSPVLQANPAALSRSLSFHERT* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0924 466 PANTHER CYCLIC DOF FACTOR 2 1 466 IPR045174 GO:0003700|GO:0006355
Apr3g0924 466 MobiDBLite consensus disorder prediction 30 45 - -
Apr3g0924 466 Pfam Dof domain, zinc finger 123 180 IPR003851 GO:0003677|GO:0006355
Apr3g0924 466 ProSitePatterns Zinc finger Dof-type signature. 128 164 IPR003851 GO:0003677|GO:0006355
Apr3g0924 466 MobiDBLite consensus disorder prediction 73 112 - -
Apr3g0924 466 MobiDBLite consensus disorder prediction 46 72 - -
Apr3g0924 466 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 466 - -
Apr3g0924 466 MobiDBLite consensus disorder prediction 345 364 - -
Apr3g0924 466 MobiDBLite consensus disorder prediction 1 124 - -
Apr3g0924 466 ProSiteProfiles Zinc finger Dof-type profile. 126 180 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0924 Apr-Chr3 24073471 24077137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0924 4 464 C2C2-Dof Transcription Factor Family AT5G39660 40.434 5.38e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr3g0924 zf-Dof 4.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0924 - - gmx:100813315 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0924 3 24073471 24077137 Apr3g0924 3 24073471 24077137 ECH
Apr3g0924 3 24073471 24077137 Apr1g0926 1 13036060 13039435 ECH
Apr3g0924 3 24073471 24077137 Apr9g2996 9 36823350 36827671 ECH
Apr3g0924 3 24073471 24077137 Apr6g0205 6 2161650 2165125 ECH