Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0218 ATGCCGTCGTCTAATTCCGGCGAGAGCCGCCGAGCGTCCAAGCCTCAGAACTCGGCCGGAGCTCCGCCTCCGCCAGAGCAAGAGAACCTCCCGTGCCCGCGCTGCGACTCCACCAACACCAAGTTCTGCTACTACAACAACTACAACTACTCCCAGCCCCGCCATTTCTGCAAGTCCTGCCGCCGGTACTGGACTCACGGCGGCACCCTCCGCGACATCCCCGTCGGCGGTGGTAGCCGGAAGAACGCAAAGCGCTCCCGCACCCACCACGTCGCCGCCTCGTCATCCTCCTCCGCCGTGACGTCGGCGCAGGAGCACCCCTTGCCGGCAATGGCCCCCATGGCGGTAACGCAAGGGTTCGGGGGTGGAGTTGACGGTGACGTCAAACAGAATGTGAACGTTTGTGGGAGCTTCACTTCGTTGCTGAACAACACCCAAGGTTCTGGATTTCTGGCCCTGGGTGGATTTGGGCTTGGGCTTGGACATGGGTTTGAAGACATGGGCTTTGGAATAGGGAGATCGGGTTGGGGTTTCCCTGGAATGGTGGAGGGCAATAACATTGGCGGCGCCGTTGCTGCTTCTGGCGTTGGGAACACGTGGCAGTTGGAAGGTGGTGAGGGTGGATTCGTTGGTGGAGATTGCTTCTCTTGGCCTGGGCTTGCCATTTCAACACCTGGAAATGGTCTGAAATGA 693 0.6017 MPSSNSGESRRASKPQNSAGAPPPPEQENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTHHVAASSSSSAVTSAQEHPLPAMAPMAVTQGFGGGVDGDVKQNVNVCGSFTSLLNNTQGSGFLALGGFGLGLGHGFEDMGFGIGRSGWGFPGMVEGNNIGGAVAASGVGNTWQLEGGEGGFVGGDCFSWPGLAISTPGNGLK* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0218 230 MobiDBLite consensus disorder prediction 71 105 - -
Apr3g0218 230 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Apr3g0218 230 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 227 IPR045174 GO:0003700|GO:0006355
Apr3g0218 230 MobiDBLite consensus disorder prediction 1 16 - -
Apr3g0218 230 MobiDBLite consensus disorder prediction 1 32 - -
Apr3g0218 230 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 1 227 - -
Apr3g0218 230 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Apr3g0218 230 MobiDBLite consensus disorder prediction 89 104 - -
Apr3g0218 230 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0218 Apr-Chr3 3934966 3935694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0218 1 230 C2C2-Dof Transcription Factor Family AT3G50410 49.407 1.50e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr3g0218 zf-Dof 7.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0218 - - gmx:778095 359.762