Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0187 ATGATCCAAGAACTGTTGGGTGGTGCTAGCCTCATAGCAGGAGAAAGAAAACCCTCCATTAATGGAGGAGGAGGAGTTCTACTCCCAACTACACCATCCCCTTCTTCTCTTCCCTCTTCTACAACCAATGTTACCACCACATCCGCAACAACAACCACAACCCCCAACACCTCTGCCACGTCATCAACTTCAGAAAACCAAAACCTTAGATGCCCTCGATGCGATTCATCGAACACCAAGTTTTGCTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACGTGTCGCCGCTACTGGACCAAAGGTGGCGCTCTTAGGAACGTTCCCATCGGTGGCGGCTGCAGGAAAAACAAGATCATCGGTGTGACGAACTCCGTGGCAAAGACAGCCTCGACCAAGATGAAAACCGTTGCATCGGAGCTTGGTAAAACCTCAAATTTTGGTCCTGGTGGGTTGGAAGTTGAGCATGAACTTCCACCCCCGAGCCAAATCCTTTGGGGCTCGCCACAAAATACTCACCTTCTTGCTTTGCTGAGAGCTAGCCAGAATCAAAACCCTAACCCTAACCCTAGTCCCATGTCCATAAGTGTCAAGGAAGAAGGGAACTTAATGGGCCACATGGTGGGTTCTGAGCCCTTGGTTTCAAATGGGTTGCTGAATCATCGATTACCATATGATGCTGTTTCACAAGTTCCTTCAGTTAGCCTATGCAGCTCGTTTTGGAGAAACAACCAAGATCACCAACCTCAACAACAAAATGGAGGCTTCGTACTTGGGGAACATCACAACACTGGAATTCAAGAGCTTTACCAGAAGCTTAGGTCATCATCGGTTAATAATTATTGTAGTGACAACTCATCACAAGTGCTTATGGGGAACGTGGCTTCTAATTATTCTTCTTCTATATCCAACAATATTTTAGAGCCAACTTCAGTTACCTCTGGTGAATTGGGATACTGGAATAATTCAACTTTTTCTTGGTCTGATCTTCCAACCACGAACGGTGCTGGTGCATATCCGTAA 1035 0.4657 MIQELLGGASLIAGERKPSINGGGGVLLPTTPSPSSLPSSTTNVTTTSATTTTTPNTSATSSTSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKIIGVTNSVAKTASTKMKTVASELGKTSNFGPGGLEVEHELPPPSQILWGSPQNTHLLALLRASQNQNPNPNPSPMSISVKEEGNLMGHMVGSEPLVSNGLLNHRLPYDAVSQVPSVSLCSSFWRNNQDHQPQQQNGGFVLGEHHNTGIQELYQKLRSSSVNNYCSDNSSQVLMGNVASNYSSSISNNILEPTSVTSGELGYWNNSTFSWSDLPTTNGAGAYP* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0187 344 ProSitePatterns Zinc finger Dof-type signature. 71 107 IPR003851 GO:0003677|GO:0006355
Apr3g0187 344 MobiDBLite consensus disorder prediction 26 70 - -
Apr3g0187 344 Pfam Dof domain, zinc finger 67 122 IPR003851 GO:0003677|GO:0006355
Apr3g0187 344 PANTHER DOF ZINC FINGER PROTEIN DOF5.1-LIKE 20 340 - -
Apr3g0187 344 MobiDBLite consensus disorder prediction 14 70 - -
Apr3g0187 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 20 340 IPR045174 GO:0003700|GO:0006355
Apr3g0187 344 ProSiteProfiles Zinc finger Dof-type profile. 69 123 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0187 Apr-Chr3 3454045 3455313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0187 32 122 C2C2-Dof Transcription Factor Family AT5G65590 61.538 2.50e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr3g0187 zf-Dof 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0187 - - vra:106766838 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0944 7 16496169 16497906 Apr3g0187 3 3454045 3455313 PCT