Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0111 ATGGCATTCATGCCCATAATAACATTCACCTGGCTCTTCTTTTCCTTCACCATGTCATTGGCAATGGACATGTCCATCATCAACCACACTCACGAAGAGAAGGTGATGGCCTTGTACGAAGAGTGGTTGGTGAAACACCAAAAAATATATAATGGGTTAGGCGAGAAGGATAAAAGGTTTCGAGTTTTTAAGAATAACTTGGAATTTATAGAAGAACACAATGCTCAAAATCACACATATAAACTTGGTTTGAACAAGTTTGCTGATATGACTAACGAAGAATATCGTGTCATGAATTTGGGCACCAGAAGTGATGCTAAGAGAAGGGTCATGAAAACCAAGATCACCGGTCACCGATATACTTACAATGCAGGTGATAGGTTGCCGAAGCACGTAGATTGGCGGTTGAAAGGTGCAATCACTCCTATCAAAGATCAAGGAAATTGTGGAAGTTGTTGGGCGTTCTCAACTGTGGCGACAGTTGAAGCAATAAACAAGATAGTCACGGGAAAGCTGTTGTCATTATCAGAACAAGAACTTCTAGACTGTGACAGAACTTACAATAAAGGGTGCAACGGGGGTCTCATGGACTACGCTTTCCAATTTATCATCGAAAATGGTGGAATAGACACAGACAAAGATTATCCATACTACGGTGTTGATGGCATTTGTAATACAACAAAGAAAAATGCAAGGATTGTGAAAATTGATGGGTATGAAGATGTTCCACCCTATGACGAGAAAGCTCTAAAGAAAGCTGTAGCTCATCAACCCGTGAGCGTGGCTATTGAAGCCTCTGGAAGGGCTTTACAGCTCTATAAATCGGGTATATTTACCGGTAAATGTGGGAAAGACTTGGATCATGGCGTGGTTGTTATTGGATATGGCTCTGAAAATGGTGTGGATTATTGGTTAGTGAGGAATTCATGGGGCAGTGACTGGGGTGAAGATGGTTACTTCAAGATACAGCGAAACATGATGAATACCTCCGCGGGTAAGTGTGGAATTGCAATGGAGGCTTCCTACCCAGTCAAAAATGAACAAAATTCTGCAGTTCCTAATTCAGTTTATGAAAGCCATGAGGTGTATGTTAGCAGTGCTTGA 1104 0.4149 MAFMPIITFTWLFFSFTMSLAMDMSIINHTHEEKVMALYEEWLVKHQKIYNGLGEKDKRFRVFKNNLEFIEEHNAQNHTYKLGLNKFADMTNEEYRVMNLGTRSDAKRRVMKTKITGHRYTYNAGDRLPKHVDWRLKGAITPIKDQGNCGSCWAFSTVATVEAINKIVTGKLLSLSEQELLDCDRTYNKGCNGGLMDYAFQFIIENGGIDTDKDYPYYGVDGICNTTKKNARIVKIDGYEDVPPYDEKALKKAVAHQPVSVAIEASGRALQLYKSGIFTGKCGKDLDHGVVVIGYGSENGVDYWLVRNSWGSDWGEDGYFKIQRNMMNTSAGKCGIAMEASYPVKNEQNSAVPNSVYESHEVYVSSA* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0111 367 SMART pept_c1 128 344 IPR000668 GO:0006508|GO:0008234
Apr3g0111 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 303 322 IPR025661 -
Apr3g0111 367 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 27 352 - -
Apr3g0111 367 Pfam Papain family cysteine protease 128 344 IPR000668 GO:0006508|GO:0008234
Apr3g0111 367 SUPERFAMILY Cysteine proteinases 30 344 IPR038765 -
Apr3g0111 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Apr3g0111 367 Pfam Cathepsin propeptide inhibitor domain (I29) 39 95 IPR013201 -
Apr3g0111 367 PANTHER CYSTEINE PROTEASE 27 352 - -
Apr3g0111 367 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Apr3g0111 367 Gene3D Cysteine proteinases 20 346 - -
Apr3g0111 367 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Apr3g0111 367 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Apr3g0111 367 PRINTS Papain cysteine protease (C1) family signature 303 309 IPR000668 GO:0006508|GO:0008234
Apr3g0111 367 CDD Peptidase_C1A 129 343 IPR039417 -
Apr3g0111 367 SMART Inhibitor_I29_2 39 95 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0111 Apr-Chr3 1933459 1935868 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g0398 9 5490328 5494669 Apr3g0111 3 1933459 1935868 ECH
Apr5g1496 5 18920900 18924698 Apr3g0111 3 1933459 1935868 ECH
Apr3g0111 3 1933459 1935868 Apr3g0111 3 1933459 1935868 ECH