Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0105 ATGATGGCCATAACCCGAAAGGACATGGATCGGATCAAGGGCCCATGGAGCCCGGAAGAGGACGAGGCCCTGCAGAAACTGGTGGAGAGGCACGGGCCCAGAAACTGGACGTTAATCAGCAGGTCCATTCCGGGACGGTCCGGGAAATCCTGCAGGCTCCGATGGTGCAACCAGCTATCTCCTCAGGTGGAGCACCGGGCCTTCACGCCCGAAGAAGACGACACAATAATCCGGGCCCATGCCCGCTTCGGCAACAAGTGGGCCACCATAGCTCGCCTTCTCTCGGGCCGAACCGATAACGCCATAAAAAACCACTGGAACTCCACCCTCAAGCGCAAGTGCGCTTCCATCGTCATCGCAGACGATCCAACCACCGCCGCTGCCGGTGGTTTCAGCCCGCAGCCGCTCAAAAGGTCTGTCAGCGCCGGCGCAGCGGTGCCGCCGGGAAGCCCCTCCGGATCCGATGTTAGTGATTCCAGCGCTCCCGGAGCGGTGTCTCCGTCGTACGTGTTCCGGCCCGTGCCGGTTCGGCCGGCTGTGGAAACGACGTCGTCTTGCGACGACGGACCTCCAACCTCGCTGTCGCTGTCTCTTCCCGGCGTGGACTCATCGGAAGTGTCGAATCGGGCGACGGCGGTGCCGGCAAATCCCTTGCCGGTGATGCCGGTAACTGCTGTAACGGCTCAGTTGGCGGCGCCGGAGGTAGGGTTAGGGGCGTTGAATTTGAGTGCGGAGTTTATGGCGGTGATGCATGAAATGATAAGGAAGGAGGTGAGGAGTTACATGGAGCAGCAGAATGGGATGTGTTTTCAGGGTGTTGATGGGTTTAGGAACGTGTCGGTGAAGCGAATTGGGATTAGTAGGGTCGATTCCTAA 876 0.5993 MMAITRKDMDRIKGPWSPEEDEALQKLVERHGPRNWTLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASIVIADDPTTAAAGGFSPQPLKRSVSAGAAVPPGSPSGSDVSDSSAPGAVSPSYVFRPVPVRPAVETTSSCDDGPPTSLSLSLPGVDSSEVSNRATAVPANPLPVMPVTAVTAQLAAPEVGLGALNLSAEFMAVMHEMIRKEVRSYMEQQNGMCFQGVDGFRNVSVKRIGISRVDS* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0105 291 SUPERFAMILY Homeodomain-like 10 106 IPR009057 -
Apr3g0105 291 SMART sant 64 112 IPR001005 -
Apr3g0105 291 SMART sant 12 61 IPR001005 -
Apr3g0105 291 Gene3D - 12 64 - -
Apr3g0105 291 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Apr3g0105 291 ProSiteProfiles Myb-like domain profile. 8 59 IPR001005 -
Apr3g0105 291 CDD SANT 15 57 IPR001005 -
Apr3g0105 291 PANTHER MYB TRANSCRIPTION FACTOR 2 264 - -
Apr3g0105 291 Pfam Myb-like DNA-binding domain 16 74 - -
Apr3g0105 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 114 IPR017930 -
Apr3g0105 291 MobiDBLite consensus disorder prediction 126 164 - -
Apr3g0105 291 MobiDBLite consensus disorder prediction 180 202 - -
Apr3g0105 291 CDD SANT 67 110 IPR001005 -
Apr3g0105 291 MobiDBLite consensus disorder prediction 185 202 - -
Apr3g0105 291 Gene3D - 66 124 - -
Apr3g0105 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 63 IPR017930 -
Apr3g0105 291 PANTHER MYB PROTEIN-RELATED 2 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0105 Apr-Chr3 1838531 1839759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0105 5 290 MYB Transcription Factor Family AT4G37260 52.469 3.19e-99 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr3g0105 Myb_DNA-bind_6 3.3e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0105 3 1838531 1839759 Apr7g0876 7 15795028 15797167 ECH
Apr9g0390 9 5287413 5288667 Apr3g0105 3 1838531 1839759 ECH
Apr5g1490 5 18865251 18866650 Apr3g0105 3 1838531 1839759 ECH
Apr3g0105 3 1838531 1839759 Apr3g0105 3 1838531 1839759 ECH
Apr3g0105 3 1838531 1839759 Apr7g0876 7 15795028 15797167 PCT