Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2452 ATGCAAGACCCAACGGCATTCCAACCCATCAAACCCCATTTTCCTGAACAAGAACAACTCAAATGCCCACGTTGTGATTCCACCAACACCAAATTCTGTTACTACAACAACTACAACCTCTCACAGCCACGCCATTTTTGCAAGAACTGTAGAAGGTATTGGACCAAAGGAGGCGCTTTGAGAAACATTCCTGTTGGGGGTGGAAGCCGAAAGAACACAAAACGGTCATCCACCAACGCCAAACGCTCTGCATCATCATCATCATCACCTTCTCCATCACCATCAGTTTCCACTGCGGCCCAAGGTGGGAGTGCTTCAGAACCCGACCCGACCCGGGTTTACACCAACCCGGTTGATCAAGAGCGGAGGGTGCTTGTTGGTGGGGGTTTCAGTTCCCTTCTGACATCAAATGGGCATTTGGGGAACCTTCTGGAGGGTCTGAATTCAAGTGGTTCGAATCTGAAAACTGTGCAAATGGAAAATTTTGGGGAGAATGTGAGTTCTGGCCCACTGGTGAATCCGGGTTCTGGTCGGAATCCCGGTTTGGAAATGCAGAGTAATGGCAGTGCAGAGAGTTTTCTGACTATGCAAAATGGTGATTCTAGTTGTTGGAATGGAAGTAATGGGTGGTCCAACCTTGCAATATACACTCCTGGGTCAGGTTTTCAGTAG 672 0.4851 MQDPTAFQPIKPHFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRSSTNAKRSASSSSSPSPSPSVSTAAQGGSASEPDPTRVYTNPVDQERRVLVGGGFSSLLTSNGHLGNLLEGLNSSGSNLKTVQMENFGENVSSGPLVNPGSGRNPGLEMQSNGSAESFLTMQNGDSSCWNGSNGWSNLAIYTPGSGFQ* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2452 223 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Apr2g2452 223 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Apr2g2452 223 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 223 IPR045174 GO:0003700|GO:0006355
Apr2g2452 223 MobiDBLite consensus disorder prediction 69 113 - -
Apr2g2452 223 MobiDBLite consensus disorder prediction 165 186 - -
Apr2g2452 223 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
Apr2g2452 223 MobiDBLite consensus disorder prediction 61 120 - -
Apr2g2452 223 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 2 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2452 Apr-Chr2 28997266 28999336 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2452 11 144 C2C2-Dof Transcription Factor Family AT1G51700 57.554 3.23e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr2g2452 zf-Dof 2.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2452 - - gmx:100798927 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2452 2 28997266 28999336 Apr2g2452 2 28997266 28999336 ECH
Apr2g2452 2 28997266 28999336 Apr2g2452 2 28997266 28999336 PCT