Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2233 ATGGATCCTTCTAGTGGACAACCCCAGGAAATGTCTAGCCAGTCACTGGAGAACATGTTAGGTTGCTCAAAAGCACAGCAAGAGAGGAAGCCAAGGCCTCATCCAGAACAAGCTCTGAAATGCCCAAGATGTGACTCCACTAACACCAAGTTTTGTTACTACAACAATTATAGTCTTTCTCAGCCAAGATACTTCTGCAAGTCTTGCAGAAGATATTGGACTAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGGGGATGCAGGAAGAACAAGAGGTCCTCATCTTCATCAAAGAGGGCTCAGGATCAGACCTTCACACCCAATCCAAACCCACTCACTACCCTCCCTCACTTGTCATATGGCTCTAGTGACTTCACCTTAGCATTAGCTAGGCTCCAAAAACAGTCAAGTGGGCAATTGGGTTACAATGATCATGATCTTTCAATTTTGGGCAATCCCACAAGTTCCCTTTGTGATATTCTTGGCCATTCAGGCATGAACCCCTTATCAACAAACCCTGGTTTCTTGGATGCAATTCGAACTGGGTTCCTTGACACACACAACAATCTTCAGAATATGTATTGTGTGTATGGAAATGGGGACATGGGGGAGGTAGACAATGGAAATTCTTGCGGTGTTGGTGTTAGTGGAGAGATGGTTCTCCCTTATGATCAAGAGATGAGCAATGCAACTACTCAGTCAATGAGTGTAACTAGCATGAAGCAAGAAGTGTGTAGTGGCAGGGAACAAAGTGAAATGAGGGTGTTGGGTGGTTTCCCATGGATGCTCAATGGAGACACAAACATGGGTGAGCTTGATTCAGGAAGAGCAGGTTGGAATGGTTTCACATCTTCCTGGCATGGGCTTCTGCATAGTCCTCTAATGTAG 891 0.4545 MDPSSGQPQEMSSQSLENMLGCSKAQQERKPRPHPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSKRAQDQTFTPNPNPLTTLPHLSYGSSDFTLALARLQKQSSGQLGYNDHDLSILGNPTSSLCDILGHSGMNPLSTNPGFLDAIRTGFLDTHNNLQNMYCVYGNGDMGEVDNGNSCGVGVSGEMVLPYDQEMSNATTQSMSVTSMKQEVCSGREQSEMRVLGGFPWMLNGDTNMGELDSGRAGWNGFTSSWHGLLHSPLM* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2233 296 MobiDBLite consensus disorder prediction 1 40 - -
Apr2g2233 296 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Apr2g2233 296 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 7 295 - -
Apr2g2233 296 MobiDBLite consensus disorder prediction 98 114 - -
Apr2g2233 296 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 295 IPR045174 GO:0003700|GO:0006355
Apr2g2233 296 MobiDBLite consensus disorder prediction 1 22 - -
Apr2g2233 296 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Apr2g2233 296 MobiDBLite consensus disorder prediction 84 114 - -
Apr2g2233 296 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2233 Apr-Chr2 27427522 27430063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2233 1 296 C2C2-Dof Transcription Factor Family AT2G28510 37.805 2.88e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr2g2233 zf-Dof 6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2233 - - gmx:778104 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2233 2 27427522 27430063 Apr2g2233 2 27427522 27430063 ECH
Apr2g2233 2 27427522 27430063 Apr3g1404 3 28489298 28491241 PCT