Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1784 ATGGAGAACAACCCAGTTCAGCTTTTTCCTCATCTCACAGTCACATTTCTTCTTATGATGACTGCTTTGCTTCCTTTGACTGAACAAGTTGCTGCAGTTTCCTCCATCAAGACCGATGCACAGGCTCTTTTTATGTTCAAAAAGATGATTGAGAAGGATTCAAATGGAGTTTTGTCAGGGTGGAAGCTGAATAGGAACCCATGCAGCTGGTATGGAGTGTCTTGCACCCTTGGGAGAGTTACTCAGCTTGATATTAGTGGGAATAATAACCTTGCTGGGACTATTTCTCTTGACCCTTTGTCTTCTTTAGATATGTTATCTGTTCTGAAACTGTCTTTGAATTCATTTTCTGTAAATTCTACTTCTTTGCTTCAGCTACCATATAGTTTGACACAGCTTGATCTATCCTTTGGTGGAGTCACAGGTCCTGTCCCTGAGAACCTTTTCTCCAAGTGTCCAAATCTTCTTGTTGTGAATCTTTCTTACAACAACTTGACAGGCCCTATTCCTGAAAATTTCTTGCAAAATTCTGATAAACTTCAGGCCCTTGACCTCTCTTCCAATAACCTTACTGGCTCAATTTCTGGCCTGAAAACTGAGTGCAATTCCTTGTTGCAGCTTGATCTATCTGGAAACCGTTTATCAGACTCAATTCCACTCGCTTTGTCAAACTGCACCAGCCTTAAAAGTTTGAACTTAGCCAACAATTTGATTTCTGGGGAAATCCCAAAGGCTTTGGGTCAGCTAAACAAGCTACAGACTTTGGATCTTTCCCATAATCAACTTACTGGCTGGATCCCTTCTGAATTGGGAAATGCATGTGCTTCCCTTTTGGAACTTAAACTTTCTTTCAACAACATCTCAGGTTCAATTCCATCTGGTTTCTCTTCTTGCACTTGGCTGCAACTTCTTGACATATCTAATAACAACATGTCAGGGCAGTTACCTGATTCTATCTTTCAGAATCTTGGGTCATTGCAGGAATTGAGGCTTGGAAACAATGCTATTTCTGGGCAATTTCCGTCCTCAATATCTTCTTGCAAAAAATTGAAGATTGTTGATTTCAGCTCAAATAAAATTTATGGATCCATCCCCAGAGATTTATGTCCAGGAGCAGCCTCACTTGAGGAGCTGAGAATGCCAGATAATCTCATTACAGGACAAATCCCAGCTGAACTATCAAAGTGCTCACAGCTGAAGACACTTGATTTTAGTCTCAACTATCTCAATGGTACAATCCCTGATGAGCTTGGACAGCTTGAAAATCTTGAGCAGCTAATAGCATGGTTCAATGGCTTGGAAGGAAAAATTCCACCAAAGTTGGGTCAATGCAAGAATCTTAAGGATCTCATACTGAATAATAATCACCTCACTGGTGGAATTCCCATTGAGTTGTTCAATTGCAGCAACCTTGAATGGATATCACTCACAAGCAATGAACTCACTGGTGAAATACCTATTGAATTTGGCCTCTTGACAAGGTTAGCAGTTCTACAGCTTGGAAATAACAGCTTGACTGGGGAGATACCTGCAGAGCTAGCAAATTGTAGCAGTTTGGTGTGGTTGGACTTGAACAGCAACAAGCTCACTGGAGAGATCCCTCCAAGACTTGGAAGGCAGCTGGGAGCAAAATCATTGTTTGGAATCCTTTCAGGGAACACTTTGGTGTTTGTAAGAAATGTTGGAAACTCGTGTAAGGGTGTTGGAGGTTTACTAGAATTCTCTGGAATTAGACCTGAAAGGCTCTTGCAGGTACCAACATTGAGGACTTGTGATTTCACAAGACTCTATTCTGGTCCTGTCCTCAGCCTGTTCACCAAGTACCAGACTTTGGAGTATCTTGATCTTTCCTACAACGAGCTTCGTGGAAAAATCCCAGAAGAATTTGGAGATATGGTGGCTTTACAGGTTCTTGAATTATCTCACAATCAACTATCTGGAGAAATCCCTTCATCCCTTGGCCAGCTCAAAAATCTTGGTGTGTTTGATGCATCACATAATAGATTGCAGGGTCATATCCCTGACTCATTCTCAAATCTCTCATTCTTAGTGCAAATTGATCTATCAAACAATGAGCTGACTGGTCAAATTCCATCTAGGGGACAACTAAGTACACTTCCAGCTACTCAATATGCAAACAATCCAGGTCTTTGTGGGGTTCCATTGCCTGATTGCAAGAATGACAACAGCCAACCCACAACAAATCTCAGTGATGATGTTGGCAAAGGTGGCCATAGAACATCAACTGCATCATGGGCAAACAGCATTGTCATGGGAATTCTCATCTCTGTTGCTTCTGTATGTATTTTAATAGTGTGGGCAATTGCAATGCGTGCAAGGAGGAAGGAGGCTGAGGAAGTGAAGATGCTTAATAGCTTGCAAGCATCCCATGCTGCCACAACATGGAAAATTGACAAAGAAAAAGAGCCTCTAAGCATCAATGTGGCAACATTTCAGAGGCAGCTGAGGAAGCTCAAGTTTTCACAGTTGATTGAAGCAACTAATGGGTTCTCAGCAGCAAGCCTTATTGGGTGTGGTGGTTTTGGTGAAGTGTTTAAGGCCACACTAAAAGACGGGTCAAGTGTGGCCATAAAGAAGCTCATTCGACTAAGCTGCCAGGGTGATAGAGAATTCATGGCTGAGATGGAAACCTTAGGGAAGATCAAGCATAGAAATCTTGTCCCTTTGTTGGGGTACTGCAAAGTAGGGGAAGAGAGGCTCCTTGTTTATGAGTACATGGAGTATGGAAGCCTAGAAGAGATGCTTCATGGGAGAATCAAGACACGTGATCGGCGCATTTTAACCTGGGAAGAAAGGAAAAAGATTGCAAGAGGTGCTGCTAAAGGACTTTGTTTTCTGCATCACAATTGCATCCCACACATCATACACAGAGACATGAAATCAAGCAATGTGCTACTTGACCATGAAATGGAGTCCAGGGTCTCAGATTTTGGCATGGCAAGACTAATAAGTGCCCTTGACACACATCTTAGTGTAAGCACTCTAGCAGGAACACCAGGATATGTTCCCCCAGAGTACTACCAAAGTTTTAGGTGCACTGCAAAGGGTGATGTTTACTCATTTGGGGTTGTCATGTTGGAACTTCTTAGTGGGAAACGGCCCACTGATAAAGAGGACTTCGGTGACACTAACTTGGTGGGGTGGGCTAAAATGAAGGTACGTGAAGGGAAGCAAATGGAAGTGATAGACCCTGATTTGCTTTTGGCCACTCAAGGAACTGATGAAGCAGAAGCCAAAGAAGTTAAGGAGATGATACGATATTTAGAGATTACTTTGCAGTGTGTTGATGACTTGCCTTCAAGAAGGCCAAACATGTTGCAGGTAGTGGCCATGCTGAGAGAGCTTATGCCTGGATCAACTGATGGAAGCAGCAACAGTGCTTGA 3405 0.4258 MENNPVQLFPHLTVTFLLMMTALLPLTEQVAAVSSIKTDAQALFMFKKMIEKDSNGVLSGWKLNRNPCSWYGVSCTLGRVTQLDISGNNNLAGTISLDPLSSLDMLSVLKLSLNSFSVNSTSLLQLPYSLTQLDLSFGGVTGPVPENLFSKCPNLLVVNLSYNNLTGPIPENFLQNSDKLQALDLSSNNLTGSISGLKTECNSLLQLDLSGNRLSDSIPLALSNCTSLKSLNLANNLISGEIPKALGQLNKLQTLDLSHNQLTGWIPSELGNACASLLELKLSFNNISGSIPSGFSSCTWLQLLDISNNNMSGQLPDSIFQNLGSLQELRLGNNAISGQFPSSISSCKKLKIVDFSSNKIYGSIPRDLCPGAASLEELRMPDNLITGQIPAELSKCSQLKTLDFSLNYLNGTIPDELGQLENLEQLIAWFNGLEGKIPPKLGQCKNLKDLILNNNHLTGGIPIELFNCSNLEWISLTSNELTGEIPIEFGLLTRLAVLQLGNNSLTGEIPAELANCSSLVWLDLNSNKLTGEIPPRLGRQLGAKSLFGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRPERLLQVPTLRTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNELRGKIPEEFGDMVALQVLELSHNQLSGEIPSSLGQLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSNNELTGQIPSRGQLSTLPATQYANNPGLCGVPLPDCKNDNSQPTTNLSDDVGKGGHRTSTASWANSIVMGILISVASVCILIVWAIAMRARRKEAEEVKMLNSLQASHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAASLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRIKTRDRRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLSGKRPTDKEDFGDTNLVGWAKMKVREGKQMEVIDPDLLLATQGTDEAEAKEVKEMIRYLEITLQCVDDLPSRRPNMLQVVAMLRELMPGSTDGSSNSA* 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1784 1134 Pfam Brassinosteroid receptor island domain 547 605 IPR045381 -
Apr2g1784 1134 Pfam Leucine rich repeat 469 529 IPR001611 GO:0005515
Apr2g1784 1134 Pfam Leucine rich repeat 129 190 IPR001611 GO:0005515
Apr2g1784 1134 Pfam Leucine rich repeat 604 645 IPR001611 GO:0005515
Apr2g1784 1134 Pfam Leucine rich repeat 301 360 IPR001611 GO:0005515
Apr2g1784 1134 Pfam Leucine rich repeat 204 262 IPR001611 GO:0005515
Apr2g1784 1134 ProSiteProfiles Protein kinase domain profile. 837 1123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1784 1134 ProSitePatterns Protein kinases ATP-binding region signature. 843 866 IPR017441 GO:0005524
Apr2g1784 1134 ProSiteProfiles Leucine-rich repeat profile. 251 272 IPR001611 GO:0005515
Apr2g1784 1134 Pfam Protein tyrosine and serine/threonine kinase 841 1118 IPR001245 GO:0004672|GO:0006468
Apr2g1784 1134 SMART serkin_6 837 1123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g1784 1134 SUPERFAMILY L domain-like 575 721 - -
Apr2g1784 1134 PANTHER LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN 26 1123 - -
Apr2g1784 1134 SMART LRR_sd22_2 249 270 - -
Apr2g1784 1134 SMART LRR_sd22_2 177 199 - -
Apr2g1784 1134 SMART LRR_sd22_2 396 425 - -
Apr2g1784 1134 SMART LRR_sd22_2 656 682 - -
Apr2g1784 1134 Gene3D - 550 606 - -
Apr2g1784 1134 ProSiteProfiles Leucine-rich repeat profile. 179 201 IPR001611 GO:0005515
Apr2g1784 1134 SMART LRR_typ_2 249 273 IPR003591 -
Apr2g1784 1134 SMART LRR_typ_2 420 444 IPR003591 -
Apr2g1784 1134 SMART LRR_typ_2 445 468 IPR003591 -
Apr2g1784 1134 SMART LRR_typ_2 517 540 IPR003591 -
Apr2g1784 1134 SMART LRR_typ_2 492 516 IPR003591 -
Apr2g1784 1134 SMART LRR_typ_2 632 656 IPR003591 -
Apr2g1784 1134 SMART LRR_typ_2 323 347 IPR003591 -
Apr2g1784 1134 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 26 1123 - -
Apr2g1784 1134 Gene3D Ribonuclease Inhibitor 150 725 IPR032675 -
Apr2g1784 1134 ProSitePatterns Serine/Threonine protein kinases active-site signature. 961 973 IPR008271 GO:0004672|GO:0006468
Apr2g1784 1134 Gene3D Transferase(Phosphotransferase) domain 1 913 1131 - -
Apr2g1784 1134 SUPERFAMILY RNI-like 241 536 - -
Apr2g1784 1134 SUPERFAMILY L domain-like 38 313 - -
Apr2g1784 1134 Gene3D Phosphorylase Kinase; domain 1 796 912 - -
Apr2g1784 1134 SUPERFAMILY Protein kinase-like (PK-like) 818 1119 IPR011009 -
Apr2g1784 1134 CDD STKc_IRAK 843 1122 - -
Apr2g1784 1134 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Apr2g1784 1134 PRINTS Leucine-rich repeat signature 180 193 - -
Apr2g1784 1134 PRINTS Leucine-rich repeat signature 249 262 - -
Apr2g1784 1134 Gene3D Ribonuclease Inhibitor 38 149 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1784 Apr-Chr2 23485068 23488942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1784 43 1122 Receptor kinase-like Gene Family AT1G55610 49.376 0.0 1012
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Apr2g1784 PK_Tyr_Ser-Thr 3.5e-43 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1784 2 23485068 23488942 Apr2g1784 2 23485068 23488942 ECH