Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g1448 ATGAACAAAGCTCACAGAATGAGAAACTATTTGCAGTTTCTTTATCCTCAGATCTTGTGCATTATTTTTGTGTGTGTTCCATATCTAGTTCAAACAAAATCCACTATTGAACCGTGCAGTTCCTCAGACTCTTGCCCCTCCCTTCTCTCTTATCTCTTGCCTTGGGAATCCAAGGTCTCAGAAATTGCAACTCGCTTCAACGTAAATGTTTCTGATATCTTGGCTGCAAACTCTGTCTTTCCTATAACACCATCAAGTGCAAATGAAATCCTTTGTGCGAAATCATTGGTGAAAATACCCATTTCATGTAATTGTGTCGATGGCATAAGAAGGTCTCTGCCAACCATTTACACTGTTCATGCAGCTGACACACTTGCCTCCATATCAGAAGGTTATGGCGGGTTAGTTAGTGCAGAACAAATTAAGAGTGTGAACAACATCAATGGCACTAACCCTTTGACATATGAAGGGACCCTTGTTATACCACTGCCATGCACATGTTTTAACAATGAGAACAATGGGGTAGCCACAATTTATATGTCATATGTGGTGGAAAGAGGGGAGAGCTTGGGAAGCATAGCAGCAGTGTTTGGTACCACTGTTTCAGACTTGGAAACTGTAAATGGGCTTGGAGAAGCAGAAGTAGATCTGGGAGACATACTTTCTGTTCCAATTGCAGCATGTTCATCCGCAACTCTGAATTGGTACAATGACAATCTAATAGTCCCAAATGGCTCGTATACTTTAACAGCCAGCAACTGCATCAAATGCACTTGTGAACCAATTGATCTCAAGATGCGATGTTTTCCTTCTGGGCTGGATATCCCCTGCTACAATTTACGTTGCAAAGGATCCAAACTTGTAATTGGGGACGAACATGTGAAACATTCAAAAACTGGTTGCAATGTAAGCCAGTGTGTTTACCGAGGCCATAGGGGTGGCAAAATTCTGAGTAGTATAATGAACTCTTCTTACGTCCAATGCCCGGGTAATAATTACTAA 1002 0.4152 MNKAHRMRNYLQFLYPQILCIIFVCVPYLVQTKSTIEPCSSSDSCPSLLSYLLPWESKVSEIATRFNVNVSDILAANSVFPITPSSANEILCAKSLVKIPISCNCVDGIRRSLPTIYTVHAADTLASISEGYGGLVSAEQIKSVNNINGTNPLTYEGTLVIPLPCTCFNNENNGVATIYMSYVVERGESLGSIAAVFGTTVSDLETVNGLGEAEVDLGDILSVPIAACSSATLNWYNDNLIVPNGSYTLTASNCIKCTCEPIDLKMRCFPSGLDIPCYNLRCKGSKLVIGDEHVKHSKTGCNVSQCVYRGHRGGKILSSIMNSSYVQCPGNNY* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g1448 333 Gene3D LysM domain 171 233 IPR036779 -
Apr2g1448 333 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 17 332 - -
Apr2g1448 333 SUPERFAMILY LysM domain 180 224 IPR036779 -
Apr2g1448 333 CDD LysM 181 210 IPR018392 -
Apr2g1448 333 Gene3D LysM domain 113 170 IPR036779 -
Apr2g1448 333 Pfam LysM domain 117 151 IPR018392 -
Apr2g1448 333 Pfam LysM domain 182 224 IPR018392 -
Apr2g1448 333 Pfam LysM domain 60 78 IPR018392 -
Apr2g1448 333 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 17 332 - -
Apr2g1448 333 CDD LysM 115 161 IPR018392 -
Apr2g1448 333 ProSiteProfiles LysM domain profile. 115 161 IPR018392 -
Apr2g1448 333 ProSiteProfiles LysM domain profile. 180 223 IPR018392 -
Apr2g1448 333 SMART LysM_2 116 162 IPR018392 -
Apr2g1448 333 SMART LysM_2 181 224 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g1448 Apr-Chr2 20558952 20562296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g1448 28 330 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 44.262 4.75e-84 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g1448 - - aprc:113855794 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g1448 2 20558952 20562296 Apr2g1448 2 20558952 20562296 ECH