Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0952 ATGTCATTAACCCCACCATTTTTTGTATTCCTCTTTCTCTTAGCACCGTTGGTAGTTCTAGCTCAATCTCCAACACCTCCTACAACTCCTTCTTCTTCTTCTTCTTCTGCTGCTGCCTGCAAAGGCACATTGTACCCAAAACTATGCCGTTCCATACTCTCAGCCATACGTTCCTCACCTTCAGACCCATATGGGTATGGCAAGTTTTCCATAAAACAAAGCCTCAAACAGGCGAAAAAACTAGCCAAGGTGTTTGAGGACTTTCTCCAACGCCACCAATCTTCATCTTTGAACCATGAAGAGATTGGTGCACTTGGTGACTGCAGAGACCTCAACCAACTCAACGTGGACTACTTAGTGTCCATCTCTGAGGAACTCAAATCGGTGAGTTCCTCAGACCCGGAGCTGGTTGAGAAAATTGAGAGCTATCTCAGTGCTGTGGCCACCAACCACTACACTTGCTATGATGGGTTGGTTGTGACCAAAAGCAACATTGCTAATGCTCTTGCAGTGCCACTCAAGGGTGTCACACAACTGTACAGTGTCTCACTTGGGTTGGTCACTCAAGCTCTTGATAGAAACCTCAAACGGAACAAGACCCGCAAACATGGCCTCCCCACAAGGAAATTTAAGGTCAGACAACCGCTTGAGAAGCTTATCAAGTTTCTTCGCACAAAGTATAGATGCACTAAAACTTCCAACTGTACTAGAACTGAAAGGATTCTTAAAGAAAGCGAAAACCAAGGAATTCTATTATATGACTTTGTGATTGTGAGCCCTTATGGGATAGACAACTACACTTCCATTGGAGACGCCATAGCTGCTGCACCCAATAACACAAAGCCAGAAGATGGCTATTTCCTTATCTATGTTAGGGAAGGATACTATAAAGAATATGTAATTGTTCCCAAGGAAAAGAAGAGTATATTGCTAGTTGGAGATGGTATTAACAAGACTGTCATCACTGGGAACCATAGTGTCATTGATGGTTGGACAACTTTCAATTCTTCCACCTTTGCTGTTGCTGGAGAAAGATTTATAGCGGTGGATGTTACATTTAGGAACACAGCTGGTCCTTCAAAGCACCAAGCAGTAGCGGTAAGGAACAATGCTGACCTCTCCACATTCTATAGGTGCAGCTTTGAAGGATATCAAGACACACTCTATGCTCACTCTTTGAGGCAATTCTATAGAGAATGTGATATCTATGGCACAGTGGACTTCATTTTTGGCAATGCCGCAGTTGTCTTCCAAAATTGTAACATCTATGCCAGAAAACCATTGCCAAACCAAAAGAATGCAGTCACAGCACAAGGAAGAACTGATCCCAATCAAAACACTGGCATTTCAATCCAAAATTGCACCATTGATGCTACACCAGACTTGGCAGCAGACTTGAATTCCACGGCGAGTTACTTAGGCAGGCCATGGAAGGAGTATTCAAGGACAGTCTATATGCAGTCATATATTGGAGATCTAATTCATCCTGCTGGATGGTTAGAGTGGAATGGCACTGTTGGATTAGACACCCTCTTTTATGGTGAGTACAACAACTATGGTCCTGGTTCTAACACTAGCAATAGAGTACAATGGCCTGGTTACTTTCTTTTGAATGCCACTCAAGCTTGGAACTTCACAGTCCTTAACTTTACATTGGGAAACACATGGCTTCCTGATACAGATATACCCTATGTTGAAGGATTACTAAGTTAG 1713 0.4302 MSLTPPFFVFLFLLAPLVVLAQSPTPPTTPSSSSSSAAACKGTLYPKLCRSILSAIRSSPSDPYGYGKFSIKQSLKQAKKLAKVFEDFLQRHQSSSLNHEEIGALGDCRDLNQLNVDYLVSISEELKSVSSSDPELVEKIESYLSAVATNHYTCYDGLVVTKSNIANALAVPLKGVTQLYSVSLGLVTQALDRNLKRNKTRKHGLPTRKFKVRQPLEKLIKFLRTKYRCTKTSNCTRTERILKESENQGILLYDFVIVSPYGIDNYTSIGDAIAAAPNNTKPEDGYFLIYVREGYYKEYVIVPKEKKSILLVGDGINKTVITGNHSVIDGWTTFNSSTFAVAGERFIAVDVTFRNTAGPSKHQAVAVRNNADLSTFYRCSFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNIYARKPLPNQKNAVTAQGRTDPNQNTGISIQNCTIDATPDLAADLNSTASYLGRPWKEYSRTVYMQSYIGDLIHPAGWLEWNGTVGLDTLFYGEYNNYGPGSNTSNRVQWPGYFLLNATQAWNFTVLNFTLGNTWLPDTDIPYVEGLLS* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0952 570 SUPERFAMILY Pectin lyase-like 255 567 IPR011050 -
Apr2g0952 570 CDD PMEI-like_3 40 188 - -
Apr2g0952 570 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 189 IPR006501 GO:0004857
Apr2g0952 570 Gene3D - 254 570 IPR012334 -
Apr2g0952 570 ProSitePatterns Pectinesterase signature 2. 402 411 IPR033131 -
Apr2g0952 570 Pfam Plant invertase/pectin methylesterase inhibitor 37 185 IPR006501 GO:0004857
Apr2g0952 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 189 IPR035513 -
Apr2g0952 570 Pfam Pectinesterase 256 553 IPR000070 GO:0030599|GO:0042545
Apr2g0952 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 190 IPR035513 -
Apr2g0952 570 PANTHER PECTINESTERASE 7 568 - -
Apr2g0952 570 SMART PMEI_2 31 186 IPR006501 GO:0004857
Apr2g0952 570 PANTHER PECTINESTERASE 7 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0952 Apr-Chr2 15557057 15562169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0952 39 570 Carbohydrate Esterase AT3G10720 64.126 0.0 719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0952 2 15557057 15562169 Apr5g0873 5 12816017 12820667 PCT