Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0940 ATGAGTCAAATGACAGATGAGGTCAAAGACATCATGCACTGCAATGATCAGATTGGGTCTCAGTTAAATGATGAGGGTAATGGAGGAAGTGTTGGTGGAGTTGTTCTGAAAAAAGGGCCATGGACATCTGCTGAAGATGCGATTTTGGTGGACTATGTCAAGAAGCATGGAGAGGGGAACTGGAATGCTGTTCAGAAGTACTCGGGCTTGTCACGTTGTGGTAAAAGTTGTCGACTGCGATGGGCCAATCATTTAAGGCCAAATTTAAAGAAAGGGGCATTTACTCCAGAAGAGGAGCAGTTGATTGCTGAACTCCATGCCAAAATGGGAAACAAATGGGCACGCATGGCAGCACACTTGCCTGGTCGTACAGATAATGAAATAAAGAACTACTGGAACACCCGGATCAAGAGGCGTCAACGGGCTGGCTTGCCACTTTATCCTCCCGAAGTATGTTTACGAGCACTGCAAGAGAGTCAGTGTGGCCAAGGTACCGATGGAATTAATGATGGTGATAGAGGGCATCATGATTTCTTGCAGAAAAACAACTATGAGATACATGATGCAATATTTGACAGTTTGAAGGAAAATCAGGGAATCTTACCTTTTGTGCCTGAGCTTCCTGATATTTCTGCCCATAGCATTCTGCCAAATGGTCTTGGTTCTCCTCCCTATTGTAATTTTGTGCCATCCACATTACCTAACCATAATCATCTTCAAGAGTCGACAGTGTCTTTATTTGGTTCCAGTGGGATGAACAGGAATGGATTTTATCCATTTGACCATATGAAGGATAATCCGTCCGATAATATTGCAGATTCATTTGGATTGCATTCTCCCCTTGATCCTGTTGCCTCCTCACATAGCTCAATTTGTCACAGCCATTCACTATCAAATGGCAATTCCTCTACTTCTAAGCCGATTTCTGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACTGAATTTGGTAGCTGGGGTACCTCTCCCCCACTTCCATTGAATGAGTCTGTTGATGCTTTCATTCATTCTCAGCCACCTAATGCAATAGACTCAGGTTGTTCTTCACCACATAATAGTGGCTTGCTTGATGCATTACTTTATCAGGCAAAGACTCTTAGTTGTTCAAAGAATAATTGTTCTGACAAGAGTTCTAACTCATCTATTGCAACTCCTCATGAGAGTTCTGCTCTGAACTTGTATGAGACAGAATGGGAGGATTATGCTGATCCTGCATCTTCCTTTTGTGCAACTTCAATCCTGAATGAGCATCCTGCTGTTAGCGCCAGTGGAAACTCATGGGATGAATGGGTACCTTTTCAGACATATAGTGGCAACAATTCGAAATTAGAGTCAGTTGACCAGGTTTGGCCCCCTAAGAGTGAAAATCAAGTCATATCCATGTTGAATCTCTCTTGGCCAGATGTCTTGCTAGATTCAGATTGGCAGGAGCAATGTTCTGAGCTTGGCATGAACCAAGCCATTGTGACTAATGCTATTGATGATTTAGGTGACAATAAGCATATGCCCAGTGGAACTTTTTCTTCAAGTACAGGAGGTTGTTTCTTGCGCATGGATTAA 1590 0.4308 MSQMTDEVKDIMHCNDQIGSQLNDEGNGGSVGGVVLKKGPWTSAEDAILVDYVKKHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPNLKKGAFTPEEEQLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLRALQESQCGQGTDGINDGDRGHHDFLQKNNYEIHDAIFDSLKENQGILPFVPELPDISAHSILPNGLGSPPYCNFVPSTLPNHNHLQESTVSLFGSSGMNRNGFYPFDHMKDNPSDNIADSFGLHSPLDPVASSHSSICHSHSLSNGNSSTSKPISEAVKLELPSLQYPETEFGSWGTSPPLPLNESVDAFIHSQPPNAIDSGCSSPHNSGLLDALLYQAKTLSCSKNNCSDKSSNSSIATPHESSALNLYETEWEDYADPASSFCATSILNEHPAVSASGNSWDEWVPFQTYSGNNSKLESVDQVWPPKSENQVISMLNLSWPDVLLDSDWQEQCSELGMNQAIVTNAIDDLGDNKHMPSGTFSSSTGGCFLRMD* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0940 529 CDD SANT 40 85 IPR001005 -
Apr2g0940 529 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
Apr2g0940 529 CDD SANT 93 134 IPR001005 -
Apr2g0940 529 Gene3D - 93 139 - -
Apr2g0940 529 Pfam Myb-like DNA-binding domain 91 134 IPR001005 -
Apr2g0940 529 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Apr2g0940 529 ProSiteProfiles Myb-like domain profile. 36 85 IPR001005 -
Apr2g0940 529 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Apr2g0940 529 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 85 IPR017930 -
Apr2g0940 529 Gene3D - 37 90 - -
Apr2g0940 529 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 506 - -
Apr2g0940 529 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 506 - -
Apr2g0940 529 SMART sant 37 87 IPR001005 -
Apr2g0940 529 SMART sant 90 138 IPR001005 -
Apr2g0940 529 SUPERFAMILY Homeodomain-like 37 132 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0940 Apr-Chr2 15307124 15318545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0940 35 507 MYB Transcription Factor Family AT3G11440 44.779 2.04e-117 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr2g0940 Myb_DNA-binding 7.2e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0940 2 15307124 15318545 Apr5g0880 5 12911487 12915971 PCT