Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0904 ATGTCGGGATCATCGTTCATAGAGTCTCTAGTTCTTCAACTTCATGAGATTTCAGCTGTCAAATTTGGAAACTTTAAGCTCAAATCTGGCATCTCCTCACCAATCTACATAGACCTCCGCCTCATTATATCCTACCCTTCCCTCCTCCAGAATATCGCTCAAACACTTATTTCCTCAGTCTCTTCCACTTCATTTGACCTTGTCTGTGGTGTCCCTTACACTGCCTTACCCATAGCCACATGTGTCTCTCTTGCTCAGAACATTCCCATGGTCATGCGTCGCAAGGAAATTAAAGATTATGGCACTTCCAAAGCAATTGAAGGTGATTTTAAGCCTGGCCAGAGTTGCTTGATCATTGAGGATTTGGTTACTAGTGGCACATCAGTTTTGGAAACGGCAGCACCGCTGCGTGCCGCTGGGTTGAAGATCAGTGATGCTGTTGTTCTGATTGATAGAGAGCAAGGTGGGAGAGAGAATTTGGAGGAGAATGGCATCAAGCTGCATTCAATTATTAAATTGACTGAAATGGTGAAAATTTTGAGTGATCATGGTAAACTTGATAACGAGATGGTAAGGGTTGTTATGAAATTCTTAGAGGAGAATCGGAAGGTTGCTGCTTTGACAAAGGTGGAGAAGCCGGCAACTAGGGTCAAAACTTTGTCATTTGGGGAGCGGGCTAAGCTGTCCAAGAATCCAACTGGAAAGAGGTTGTTTGAGATAATGGCTGAGAAGGAGAGTAATCTGTGTTTGGCAGCCGATGTTGGAACAGCAGCTGAATTATTAGATATTGCTGAGAAGGTTGGACCTGAGATATGTTTACTGAAGACTCATGTGGATATTTTGCCAGATTTTACTCCTGATTTTGGCTCTAAGCTTCTGTCGATTGCAGAGAAATACAACTTCTTAATCTTTGAGGATCGTAAATTTGCTGACATTGGTAACACAGTCACCATGCAATATGAAGGAGGGATCTTTCATATATTGGATTGGGCTCACATAGTAAATGCTCACATAATCTCTGGTCCTGGAATTGTTGATGGATTAAAATTGAAGGGTTTACCTCGGGGCAGAGGTCTGTTGCTGCTTGCTGAAATGAGTTCAGCTGGAAACCTTGCTAAGGGAGACTATACTGCTGCTGCATTGAAAATTGCTGAGGATCATTCTGATTTTGTAATTGGCTTCATCTCAGTTAATCCTGCATCATGGCCAGGGGCACCCATAAATCCTTCTTTCATTCAGGCAACCCCTGGAGTTCAAATGGTAACTGGTGGCGATGCTTTAGGGCAGCAATATAACACTCCATATTCTGTCGTCCATGATAGGGGCAGTGATATTATTATCGTGGGACGTGGCATCATCAAAGCTGCAAATCCTGCTGAGGCAGCTCATGAATACCGTCTTCAAGGATGGAATGCATATTTGGCCAAATGTACTTGA 1437 0.4322 MSGSSFIESLVLQLHEISAVKFGNFKLKSGISSPIYIDLRLIISYPSLLQNIAQTLISSVSSTSFDLVCGVPYTALPIATCVSLAQNIPMVMRRKEIKDYGTSKAIEGDFKPGQSCLIIEDLVTSGTSVLETAAPLRAAGLKISDAVVLIDREQGGRENLEENGIKLHSIIKLTEMVKILSDHGKLDNEMVRVVMKFLEENRKVAALTKVEKPATRVKTLSFGERAKLSKNPTGKRLFEIMAEKESNLCLAADVGTAAELLDIAEKVGPEICLLKTHVDILPDFTPDFGSKLLSIAEKYNFLIFEDRKFADIGNTVTMQYEGGIFHILDWAHIVNAHIISGPGIVDGLKLKGLPRGRGLLLLAEMSSAGNLAKGDYTAAALKIAEDHSDFVIGFISVNPASWPGAPINPSFIQATPGVQMVTGGDALGQQYNTPYSVVHDRGSDIIIVGRGIIKAANPAEAAHEYRLQGWNAYLAKCT* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0904 478 Gene3D - 3 211 IPR029057 -
Apr2g0904 478 TIGRFAM pyrE: orotate phosphoribosyltransferase 14 175 IPR004467 GO:0004588
Apr2g0904 478 CDD PRTases_typeI 65 172 IPR000836 -
Apr2g0904 478 CDD OMP_decarboxylase_like 248 465 - -
Apr2g0904 478 ProSitePatterns Orotidine 5'-phosphate decarboxylase active site. 303 316 IPR018089 GO:0004590|GO:0006207
Apr2g0904 478 Pfam Phosphoribosyl transferase domain 50 158 IPR000836 -
Apr2g0904 478 SUPERFAMILY PRTase-like 7 196 IPR029057 -
Apr2g0904 478 SUPERFAMILY Ribulose-phoshate binding barrel 220 474 IPR011060 -
Apr2g0904 478 Gene3D Aldolase class I 216 478 IPR013785 -
Apr2g0904 478 SMART OMPdecase_2 247 465 IPR001754 GO:0004590|GO:0006207
Apr2g0904 478 Pfam Orotidine 5'-phosphate decarboxylase / HUMPS family 246 465 IPR001754 GO:0004590|GO:0006207
Apr2g0904 478 TIGRFAM pyrF: orotidine 5'-phosphate decarboxylase 248 466 IPR014732 GO:0004590|GO:0044205
Apr2g0904 478 PANTHER PHOSPHORIBOSYLTRANSFERASE, OROTIDINE 5-PHOSPHATE DECARBOXYLASE 7 478 - -
Apr2g0904 478 Hamap Orotate phosphoribosyltransferase [pyrE]. 1 234 IPR023031 GO:0004588|GO:0006221
Apr2g0904 478 PANTHER OROTATE PHOSPHORIBOSYLTRANSFERASE 7 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0904 Apr-Chr2 14261334 14267155 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0904 2 14261334 14267155 Apr2g0904 2 14261334 14267155 ECH
Apr2g0904 2 14261334 14267155 Apr5g0946 5 13961241 13965723 PCT