Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0708 ATGCCTGATTTACCTGAGATGGACTACAATTCGTCAGAAGAACATCATGAGACACACCAAAGTGCTCATAGTTGTGCAAATTCAGGAAACAATTCACCAACTTATCCCACAAATGTGAACCATGAAGCAAAAGATTCTAGAACAACTATCCACACAGCAAGTGAAGATGGACATTTGGACCAGGTTTCTAAAACTGATGCAAAGTTGCAAAGTATATCTAAACCTCAGAAATTAATACCACCAAACAGGAACATACATGATTTCAATACTCAGCACCAGAGTCCAAGCACAAAGATGCCTCCAAATTCCGATCATTCATTTACCTCACAAGGATTGCCAACACCAAATGCAAAGGGAATGGCTACCCATACAAAGACCACAAATCAAGGTCCGGGGAGTGGTTCTAGCTCTCGCAGTGATAGCTTAGAGAGCACAAGTGCACCCATTAGGCCACACACTGGTGGTGATGTAAGGTGGGAAGCAATTAACATGGTTTCCAAGAGTGGCCCTCTCAATCTTAGCCATTTCAGGCTTCTAAAGCGCATTGGTTATGGTGACATTGGAAGTGTATATCTTGTGGAACTTAAAGGAACTAAGACCTACTTTGCTATGAAAGTGATGGACAAGGCTGCACTTATAAGCAGAAACAAGCTTCTGAGAGCACAGACAGAAAAGGAGATTCTTGGACTTCTTGATCACCCCTTCCTTCCCACTTTGTATTCTTACTTTGAAACTGATAAGTTTTACTGTTTGGTCATGGAGTTCTGTAGTGGAGGTGATCTTCATACTCTTAGACAGAAACAACCTAACAAGTGTTTCACTGAAGAAGCTGCAAGGTTTTATGCTTCAGAGGTATTGTTAGCTCTGGAATACCTACACATGCTTGGCATTGTATACAGAGACTTGAAGCCGGAGAATCTTTTGGTGAGAGATGAAGGGCACATCATGCTCTCAGATTTTGACTTGTCCCTTCGCTGTTCTGTGAGTCCTACACTAGTCAAGTCTTCATCAGCTCATGCAAGTAATAGTGGTGGTGGTGGTGATTCTGGAGGCATGTTAGGTGATGACCAATCAGTGCAAAGTAGTGCTCAACCATCAAGTTTTTTCCCACGCATTTTGCCTTCAAAGAAGAACCGCAAGGCAAAATCAGACTTTGGCCTATTGGTTGGTGGAGGAAGGCTTCCTGAACTGATGGCAGAACCAACCAATGTGCGTTCAATGTCATTTGTAGGAACACATGAATATCTTGCTCCTGAGATCATCAAAGGAGAGGGTCATGGTAGTGCAGTGGATTGGTGGACTTTTGGTATCTTCTTGTATGAGCTGTTGCATGGAACAACCCCTTTTAAGGGTGCTGGATATAAAGCCACACTTTTCAATGTTGTTGGACAACCACTGAGGTTCCCAGAAACTCCACAGGTAAGTTCTGTGGCTCGTGATCTCATTAGAGGGTTGTTGGTGAAAGAGCCTCAGAAGAGAATTGCATACAAAAGAGGAGCTACAGAGATAAAACAACATCCATTTTTCGAGGGTGTGAATTGGGCTCTTGTCAGAAGTGCCACACCTCCTCATATACCAGATGCCATAGACTTTTCCAAGTATGCTAGCAAAGACACAGCACCCCCAGTTGACAAGAAGATGGCAGATATTGCTAATGATAAAAACACCAAAAAATCTTCTGATTCTTACGTAGACTTTGAGTATTTTTAG 1710 0.4263 MPDLPEMDYNSSEEHHETHQSAHSCANSGNNSPTYPTNVNHEAKDSRTTIHTASEDGHLDQVSKTDAKLQSISKPQKLIPPNRNIHDFNTQHQSPSTKMPPNSDHSFTSQGLPTPNAKGMATHTKTTNQGPGSGSSSRSDSLESTSAPIRPHTGGDVRWEAINMVSKSGPLNLSHFRLLKRIGYGDIGSVYLVELKGTKTYFAMKVMDKAALISRNKLLRAQTEKEILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGDLHTLRQKQPNKCFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVSPTLVKSSSAHASNSGGGGDSGGMLGDDQSVQSSAQPSSFFPRILPSKKNRKAKSDFGLLVGGGRLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGTTPFKGAGYKATLFNVVGQPLRFPETPQVSSVARDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGVNWALVRSATPPHIPDAIDFSKYASKDTAPPVDKKMADIANDKNTKKSSDSYVDFEYF* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0708 569 Gene3D Phosphorylase Kinase; domain 1 174 259 - -
Apr2g0708 569 ProSiteProfiles Protein kinase domain profile. 176 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0708 569 MobiDBLite consensus disorder prediction 1 153 - -
Apr2g0708 569 MobiDBLite consensus disorder prediction 335 371 - -
Apr2g0708 569 MobiDBLite consensus disorder prediction 538 560 - -
Apr2g0708 569 SMART serkin_6 176 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0708 569 CDD STKc_phototropin_like 174 530 - -
Apr2g0708 569 SUPERFAMILY Protein kinase-like (PK-like) 164 527 IPR011009 -
Apr2g0708 569 PANTHER FLIPPASE KINASE 1-RELATED 23 569 - -
Apr2g0708 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672|GO:0006468
Apr2g0708 569 MobiDBLite consensus disorder prediction 539 560 - -
Apr2g0708 569 PIRSF ILK 34 67 - -
Apr2g0708 569 PIRSF ILK 384 498 - -
Apr2g0708 569 PIRSF ILK 147 343 - -
Apr2g0708 569 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 23 569 - -
Apr2g0708 569 MobiDBLite consensus disorder prediction 22 43 - -
Apr2g0708 569 Gene3D Transferase(Phosphotransferase) domain 1 403 527 - -
Apr2g0708 569 Pfam Protein kinase domain 403 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0708 569 Pfam Protein kinase domain 177 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0708 569 MobiDBLite consensus disorder prediction 44 63 - -
Apr2g0708 569 Gene3D Transferase(Phosphotransferase) domain 1 260 330 - -
Apr2g0708 569 MobiDBLite consensus disorder prediction 354 371 - -
Apr2g0708 569 MobiDBLite consensus disorder prediction 64 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0708 Apr-Chr2 8933262 8935875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0708 142 569 AGC Kinase Gene Family AT1G79250 74.273 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Apr2g0708 Pkinase 5e-37 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0708 2 8933262 8935875 Apr5g0773 5 10977093 10979897 PCT