Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0617 ATGGGTGTTAACGAAGATTTCATCAAGGATGATGAGTATTTGGATGATGAAGTTCCACTTCCAGGATTTCGGTTCCACCCCACAGATGAAGAACTTGTTAGTTTCTATCTTCGAAGGAAGCTTGACAAGAAACCCATAAGCATCGAGCTCATCAAACAAATTGATATCTACAAATACGATCCTTGGGATCTTCCAAAAGCAAGTGCCACTAGGGGAGAGAAGGAGGGGTATTTCTTTTGTAAAAGAGGGAGGAAGTATAGGAATAGCATAAGGCCTAATAGAGTAACTGGCTCTGGCTTTTGGAAAGCAACTGGCATAGACAAACCAGTGTACTCACATGGAGGAGAGGGTAATAAATGCATTGGACTCAAGAAAACATTAGTGTACTACCGTGGCAGTGCAGGCAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTTCCTTCTAATACAGACACCCAAACAAACCTTCCCAACTCCAAGCATTATGTAGATATTCCACAAGAAGCTGAAATTTGGACATTGTGTCGAATTTTCAAAAGAAATGTGTCGCAAAAGAAGCACGCGCCAGACTTAAGACAATTAGCTGCTAAGCGTAATTCCATCAATGACAAGAGCACCAAGATGAGCAATGCAGAGTTTAACACTAATCAAGAAGCATATATAAATTTTGGTGCCCATTATCACAGTGAACAGAAACCTATCATTAATTACACAAGCAGTATTCAAAGGAATCAGTTTCATATGGGTCAATTGAGTTCTCCAGTGGCACATCAACCTCAACTAACTGCACCATCCTCTAACTTCGTGACTAATCCAATTGCAAACGACTTCTTCACGTTTGATAACTGGGATGAACTTGGATCCGTAGTGAAGTTTGCTGTTGATTCTCCTAGTTCGTAA 909 0.4081 MGVNEDFIKDDEYLDDEVPLPGFRFHPTDEELVSFYLRRKLDKKPISIELIKQIDIYKYDPWDLPKASATRGEKEGYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSHGGEGNKCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNTDTQTNLPNSKHYVDIPQEAEIWTLCRIFKRNVSQKKHAPDLRQLAAKRNSINDKSTKMSNAEFNTNQEAYINFGAHYHSEQKPIINYTSSIQRNQFHMGQLSSPVAHQPQLTAPSSNFVTNPIANDFFTFDNWDELGSVVKFAVDSPSS* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0617 302 Gene3D NAC domain 28 187 IPR036093 GO:0003677|GO:0006355
Apr2g0617 302 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 298 - -
Apr2g0617 302 Pfam No apical meristem (NAM) protein 21 149 IPR003441 GO:0003677|GO:0006355
Apr2g0617 302 ProSiteProfiles NAC domain profile. 19 183 IPR003441 GO:0003677|GO:0006355
Apr2g0617 302 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE-RELATED 11 298 - -
Apr2g0617 302 SUPERFAMILY NAC domain 17 183 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0617 Apr-Chr2 7185769 7187996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0617 7 192 NAC Transcription Factor Family AT5G39820 55.882 5.38e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr2g0617 NAM 4.9e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0617 2 7185769 7187996 Apr2g0617 2 7185769 7187996 ECH