Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0595 ATGGCGAAACCTGGCCGAGTTCGTCGCTCACCGTCGGGTTCCGTCTCCGGCTCTTCCTCTCGCTCCTCTTCCCCCTCCGATTCTCGCTCCTCCTCTCGCTCTCGTTCGCTCTCTCGCTCTCGTTCGCCCTCGCGCTCCAGATCTTTCTCTTCCTCCTCCTCCTCTCCATCTCGCAGTTCTCGCAGCCGTAGCCACAGCCGGAGCCCTCCTCCTCAGAGGCGGAAAAGTCCTGCCGAACCAGCTAGGCGAGGTCGATCTCCTCCACCTCCGTCTAAAAGAACTTCTCCTCCGCCAAGGAAACCTTCACCTGTACGGGAATCACTTGTTCTTCATGTTGAAAAGCTCAGTAGAAATGTCAATGAAGGGCATTTGAAAGAAATTTTCAGTAACTTTGGTGAGGTTGTAAGTGTGGAGTTGGCCATGGATCGGACTGTTAATCTACCAAAAGGATATGGATATGTGCAATTCAAGACCAGAGGGGATGCTGAAAAAGCATTATTGTACATGGATGGTGCCCAAATAGATGGCAATGTCATCAAGGCAAGATTTACTCTACCTCCAAGACAAAGAGTTTCACCACCTCCAAAGCCTTCTGCTGTTGCTCCAAAAAGAGATGCCCCCAGGGCTGATAATGCTAATGTGGATGTTGAAAAGGATGGACCGAAGCGTCAAAGAGAATCTCCTCGGAGAAAACCTCCTCCTTCACCACGGAGGAGATCTCCTGTGCCTCGAAGAGCTGGATCTCCAAGACGACCAGACTCTCCGCGCCGTCGTGCAGATTCTCCTCTCCGTCGTCGGTTAGACTCTCCTTATCGTCGTGGAGACACCCCTCCTAGGAGGCGACCTGTGTCTCCTGGAAGAGGTCGTTCTCCATCTCCACCAAGACGCCTTAGATCCCCTGCAAGGGTTTCACCTAGAAGGATGCGTGGAAGCCCAGGTCGGAGACGATCACCTCCTCCTCCTCCAAGGCGCCGTTCACCACCTAGACGGGCTCGTAGTCCTCCTAGAAGATCTCCAATTGGTCGTAGACGTAGTCGCTCTCCCATTCGAAGGGGACCACGCTCACGCTCACGGTCATTCTCACCTCGCAGAGGTCGACCTCCTGTGAGACGTGGAAGGTCATCATCCTACTCTGATTCACCAAGTCCACGCAAGGTATCAAGAAGATCAAAGAGTCGCAGTCCAAGAAGGCCTTTGAGAGGAAGGGGCAGTAGCAACAGCAGCAGCAGCAGTTCACCACCCCCAGCACGCAAACCATAG 1260 0.5373 MAKPGRVRRSPSGSVSGSSSRSSSPSDSRSSSRSRSLSRSRSPSRSRSFSSSSSSPSRSSRSRSHSRSPPPQRRKSPAEPARRGRSPPPPSKRTSPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRTVNLPKGYGYVQFKTRGDAEKALLYMDGAQIDGNVIKARFTLPPRQRVSPPPKPSAVAPKRDAPRADNANVDVEKDGPKRQRESPRRKPPPSPRRRSPVPRRAGSPRRPDSPRRRADSPLRRRLDSPYRRGDTPPRRRPVSPGRGRSPSPPRRLRSPARVSPRRMRGSPGRRRSPPPPPRRRSPPRRARSPPRRSPIGRRRSRSPIRRGPRSRSRSFSPRRGRPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLRGRGSSNSSSSSSPPPARKP* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0595 419 MobiDBLite consensus disorder prediction 11 66 - -
Apr2g0595 419 CDD RRM_RNPS1 110 182 IPR034201 -
Apr2g0595 419 MobiDBLite consensus disorder prediction 249 282 - -
Apr2g0595 419 SMART rrm1_1 109 182 IPR000504 GO:0003723
Apr2g0595 419 MobiDBLite consensus disorder prediction 1 106 - -
Apr2g0595 419 MobiDBLite consensus disorder prediction 208 233 - -
Apr2g0595 419 PANTHER BNAA09G56240D PROTEIN 24 405 - -
Apr2g0595 419 SUPERFAMILY RNA-binding domain, RBD 94 195 IPR035979 GO:0003676
Apr2g0595 419 MobiDBLite consensus disorder prediction 82 103 - -
Apr2g0595 419 MobiDBLite consensus disorder prediction 185 419 - -
Apr2g0595 419 Gene3D - 8 192 IPR012677 -
Apr2g0595 419 MobiDBLite consensus disorder prediction 399 419 - -
Apr2g0595 419 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 24 405 - -
Apr2g0595 419 MobiDBLite consensus disorder prediction 300 370 - -
Apr2g0595 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 180 IPR000504 GO:0003723
Apr2g0595 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0595 Apr-Chr2 7005557 7010365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0595 110 183 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 3.09e-08 53.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0595 2 7005557 7010365 Apr2g0595 2 7005557 7010365 ECH