Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0580 ATGAGCAACATAAGCATGGTAGAGTCTAAGCTCCCACCAGGGTTCAGGTTTCATCCTAGAGATGAAGAGCTTGTCTGTGATTATTTGATGAAGAAGGTTACACACAGTGATTCCCTTCTCATGATTGACGTTGACCTTAACAAGTGTGAGCCTTGGGATATTCCTGAAACAGCATGTGTGGGAGGGAAAGAATGGTATTTCTATACACAACGAGATAGAAAGTATGCAACAGGGCTACGTACAAATCGTGCCACTGCTTCAGGGTATTGGAAGGCCACAGGGAAGGATAGGGCTATCCTTAGGAAGGGTACCCTTGTTGGGATGAGGAAGACTTTGGTGTTCTATCAAGGAAGAGCACCCAAAGGGAGAAAAACTGAGTGGGTCATGCATGAATTTCGTATTGAAGGCCCACATGGCCCTCCTAAGCTTTCTTCTTCCAAGGAAGACTGGGTTTTGTGTAGGGTGTTCTACAAAAATAGAGAAGTGGCAACAAAGCCTAGTATGGGTAACTGCTATGATGACACCGGCTCTTCAACTCTCCCTGCATTAATGGACTCTTACATTAGTTTTGATCAAGCTCAAACTCATGCAGATGAATTTGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCAAAACCAAACAAACCCCATTTTCAACCACATAACTACTGTGGAGCCAAAATTGCCAATCAACAATGCTACAAGTGCATATGGAGGAGCACCAAATTTGGGTTATTGCTTAGACCCTTTATCCTGTGACAGAAAAGTATTAAAAGCTGTTTTGAGTCAGATCACAAAGATGGAAAGGAATCCTCTTAACCAAAGTCTAAAAGGGTCACCAAGTTTAGGAGAAGGAAGTTCAGAGAGTTACTTATCTGAAGTGGGTATGCCACACATGTGGAACAATTACTAA 912 0.4287 MSNISMVESKLPPGFRFHPRDEELVCDYLMKKVTHSDSLLMIDVDLNKCEPWDIPETACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRAILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKLSSSKEDWVLCRVFYKNREVATKPSMGNCYDDTGSSTLPALMDSYISFDQAQTHADEFEQVPCFSIFSQNQTNPIFNHITTVEPKLPINNATSAYGGAPNLGYCLDPLSCDRKVLKAVLSQITKMERNPLNQSLKGSPSLGEGSSESYLSEVGMPHMWNNY* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0580 303 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Apr2g0580 303 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Apr2g0580 303 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Apr2g0580 303 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 299 - -
Apr2g0580 303 PANTHER NAC (NO APICAL MERISTEM) DOMAIN TRANSCRIPTIONAL REGULATOR SUPERFAMILY PROTEIN 3 299 - -
Apr2g0580 303 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0580 Apr-Chr2 6848347 6853014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0580 2 301 NAC Transcription Factor Family AT1G56010 60.188 8.50e-127 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr2g0580 NAM 1.5e-36 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0580 2 6848347 6853014 Apr2g0580 2 6848347 6853014 ECH