Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0546 ATGCTCGAACCGCGTGAATCTGATATACCTGTCCTGTTTCTGGTCCTGGTTGTACTTCCGTTGGTGGCTTACATCTTACTTGGAAAATGGAGTGAGACAACTAAGAAGAGAGATAGGATAAATTTACTTGCTCAATTGGCTGCTGAAGAATCTCTGAGAGCAGAAGAAATGGCCGTTGCCGATGTACTCCCTCCAGTGTCTTCTTCAAAGAGTGAACTTCATGGGTGTGCTAGGTGCTCTGCTCCTGCGAGAACTCGCTGCTCAAGATGCAAGACTGTTAGATATTGCTCTGGGAATTGTCAAATAATCCATTGGAGGCTAAGTCACAAGCAAGAATGCCAGCAATTGGAGACTCATAAACCAAGTTCATTTCCTCTGGGTATTTCAGTTGAGGATTTTGCTCATGGGAGTGACTTTTATGAAAATTTGAACAACCAGTACTTTGCTCACAGTTTGACTTTAAGGGAGAATGCACCTTTGGACAATTTGGTTCACCCTCTGACAGGCACTGGTGCTTATGCTACAGTTGATTTTTCCCTATTCAACAATCCCCAACCTTCCACTTTTGAAAGAAGAACTTCCCATAAATCCAACAGAGAAACACGTAGAAGAGATAATGGGTCCATCTATGAGTCTTATGATTATAAAGCTAATGGTTCTCTCTCTTCAAATGTGGCATCAAAGGAGGCATTTATGAGACCGAAGTCAAGAAATAACGATGATTCTGTGTTGGAGGAAGAAACTTCAAAGGTCAATTCCTGTGGCATTGGAGCTTATGTTCCCGAACAAGATGTATTAAGAGGCACGATCCATGACGATGATAACTATCAATGTCAATATGGAAATGCATTTGTAACAACAAACAAATATGAACGCTTAAGTAATTCAAATGCTGCAAACAATGATGAATGTGTAGATGAATTTGAATCAGACATTGCCACTAAAGCAGGAAATGTAGTCAAAGGGGGAAATTATCATTCTGATGATGCGGCACAGTTCAAATGCTCTCCAGAAATAACAATTAAAGGAAATGTGAAGGCTAAAAAGATATCACATCCTCCCAAGGCCAAATGTTCTAAATCACCAAAGCCAACATTGAAGACATCGACAGACTTTTGTTGCCCAGAATTAGAGAAGAAAGGGAAAATTGCAGATGAACAAAAAGTTGCTGGAATCAGAGATAGCATCCCTTTACATGGTAGCAATGGGACTGCAAGCACTGGAATTATGAAAATGATTGGCTTGAGGAAATCAACAAAACTTACTGCACTGGCTTCTTCTGAAGTCAGTGAAGTAAGGTACAAGAAGGTAAAGAAGATTAAGATGCTGTTTCCTTATGATGAATTTGTAAAGCTATTTCAGACTGAAGCCATTGGTATATGTCCTAGGGGCCTTTTAAATTGTGGGAACAGTTGCTATGCCAATGCTGTCTTGCAATGCTTGACTTCTACAAAGCCTCTCGTCATCTATCTGCTTTATAGATCACATTCAAACGCCTGTTGTGCTAAAGATTGGTGTCTAATGTGCGAGTTAGAGCAGCACATAATGATTTTGAGAGAAAATGGGGCTCCTTTATCTCCTAGTAGAATACTTTGGCATATGCGGAGCATTAATAGCCACATGGGTGATGGAAGTCAGGAAGATGCCCATGAATTTTTAAGGCTTTTAATTGCATCAATGCAATCTATATGCTTAGAGGGACATGGTGGTGAGAAAAAGGTTGATCCTAGACTACAAGAAACTACTTTCATACAACATACTTTTGGTGGCCGTCTTCAATCCAAGGTTAAGTGTTTGAATTGTAATCATGAGTCAGAAAGATATGAGAACATTATGGACTTAACGTTGGAGATATTTGGTTGGGTTGAGTCACTGGAAGATGCACTGACTCAATTTACTTCCCCTGAAGATTTGGATGGTGAAAATAAGTACAGATGTGGAAGATGCACAGCATATGTTCGAGCTAGAAAGCAGTTGAGCATACATGAGGCCCCTAACATCTTGACTATTGTTTTAAAGAGATTTCAGGAAGGAAGATATGGGAAAATTAATAAGTGCATAACTTTTCCTGAAATGTTGGATATGATTCCTTTCATGACTGGGACGGGTGATATTCCTCCACTTTACATGCTTTATGCTGTTGTCGTGCACCTGGACACGCTAAATGCATCTTTCTCTGGACATTATGTTTCATATGTGAAAGATATGCAAGGCAATTGGTTCAGAATAGATGATATTGAGGTTCAGCCAGTGCTAATTAATCAGGTCATGTCAGAAGGAGCATATATCTTATTCTACATGAGGTCGTGTCCCCGTCCTCCTGTAGAACATACCGCTAAAGTTGTGCAGCAATCAGTTTCTAATTTTGCAAAGCATCATCCAATGGAAATGCAGAAGCCTAATAAATCGGGACATAGCAGACATGGCAATCAGATTTTTGTCTCACAGTCATCACCCAATGACAAGCCAGAAATTGCTACACACATTGTTGACGCCAGTCATACCACTAATGGCTTCCTTAGGAAAAGCACCAATAGGAATGCCCTTCCAGTTACACAAACTTATGCTGATAATGTCAGGCATGAATTTTCAGATTGCACACCAAGTGATTGGTCCCTTTTCACAAGCTCAGATGAGGCTTCTTTCACAACTGAGAGTACCAGGGACTCCTTTAGTACTGTAGACTATGGTGATTCATGTAACATGGATCCAATTTCATCTATCTTCAATTACACCCCCGAAAACTCCTACATGAAGTTTTCACATAGTAAGCCAGGTACAAGGTTCTTCCCTGAAAAGGGTCATGTTGAACGAGTTCAGAGAATTGATCAGTCTAAAAGGGTCATCCATTCTTCTAATGAACATCCATCAAATGGGAATTGTAGCATGTATGTAAATTATGGGAGTAATCCTGTGTATGGTATTACTCGGACTTCTAGTCAGTGTGAATTCTAG 2955 0.401 MLEPRESDIPVLFLVLVVLPLVAYILLGKWSETTKKRDRINLLAQLAAEESLRAEEMAVADVLPPVSSSKSELHGCARCSAPARTRCSRCKTVRYCSGNCQIIHWRLSHKQECQQLETHKPSSFPLGISVEDFAHGSDFYENLNNQYFAHSLTLRENAPLDNLVHPLTGTGAYATVDFSLFNNPQPSTFERRTSHKSNRETRRRDNGSIYESYDYKANGSLSSNVASKEAFMRPKSRNNDDSVLEEETSKVNSCGIGAYVPEQDVLRGTIHDDDNYQCQYGNAFVTTNKYERLSNSNAANNDECVDEFESDIATKAGNVVKGGNYHSDDAAQFKCSPEITIKGNVKAKKISHPPKAKCSKSPKPTLKTSTDFCCPELEKKGKIADEQKVAGIRDSIPLHGSNGTASTGIMKMIGLRKSTKLTALASSEVSEVRYKKVKKIKMLFPYDEFVKLFQTEAIGICPRGLLNCGNSCYANAVLQCLTSTKPLVIYLLYRSHSNACCAKDWCLMCELEQHIMILRENGAPLSPSRILWHMRSINSHMGDGSQEDAHEFLRLLIASMQSICLEGHGGEKKVDPRLQETTFIQHTFGGRLQSKVKCLNCNHESERYENIMDLTLEIFGWVESLEDALTQFTSPEDLDGENKYRCGRCTAYVRARKQLSIHEAPNILTIVLKRFQEGRYGKINKCITFPEMLDMIPFMTGTGDIPPLYMLYAVVVHLDTLNASFSGHYVSYVKDMQGNWFRIDDIEVQPVLINQVMSEGAYILFYMRSCPRPPVEHTAKVVQQSVSNFAKHHPMEMQKPNKSGHSRHGNQIFVSQSSPNDKPEIATHIVDASHTTNGFLRKSTNRNALPVTQTYADNVRHEFSDCTPSDWSLFTSSDEASFTTESTRDSFSTVDYGDSCNMDPISSIFNYTPENSYMKFSHSKPGTRFFPEKGHVERVQRIDQSKRVIHSSNEHPSNGNCSMYVNYGSNPVYGITRTSSQCEF* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0546 984 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 464 479 IPR018200 GO:0004843|GO:0006511
Apr2g0546 984 SUPERFAMILY HIT/MYND zinc finger-like 73 117 - -
Apr2g0546 984 MobiDBLite consensus disorder prediction 192 210 - -
Apr2g0546 984 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 20 932 - -
Apr2g0546 984 ProSiteProfiles Zinc finger MYND-type profile. 76 113 IPR002893 -
Apr2g0546 984 Pfam MYND finger 76 113 IPR002893 -
Apr2g0546 984 CDD Peptidase_C19E 462 767 - -
Apr2g0546 984 Pfam Ubiquitin carboxyl-terminal hydrolase 464 766 IPR001394 GO:0004843|GO:0016579
Apr2g0546 984 Gene3D - 65 119 - -
Apr2g0546 984 MobiDBLite consensus disorder prediction 185 210 - -
Apr2g0546 984 MobiDBLite consensus disorder prediction 804 818 - -
Apr2g0546 984 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 20 932 - -
Apr2g0546 984 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 463 769 IPR028889 -
Apr2g0546 984 Gene3D Cysteine proteinases 460 777 - -
Apr2g0546 984 MobiDBLite consensus disorder prediction 796 818 - -
Apr2g0546 984 SUPERFAMILY Cysteine proteinases 460 769 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0546 Apr-Chr2 6277124 6285824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0546 437 780 Miscellaneous Gene Families AT4G31670 52.137 3.61e-123 387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0546 2 6277124 6285824 Apr2g0546 2 6277124 6285824 ECH