Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0488 ATGATCACCACTTTCTCTCAAATTCTCTTTCTTTCGTTCCTTGCCATTTGGTTCACATCGTTTGCTGCCAATATTACTCAGCCAGATGAAGTGCAAGCTCTGAAAGATATAGCAAACACACTTGGTAAGAAGGATTGGGACTTGAATATAGATCCATGTGGTGAACGAAGAAACTGGACTACTCCTACTGTGAACGGAGTAATGAACAACGTCACCTGCAATTGCTCTATCCCCGGTTCCAATTTCTGCCACGTTGTTGGGATATTGCTGAAATCACAAAATCTTCAAGGCGTGCTCCCACCCGAACTGATAAGGTTGCCTTACCTCGAAGAAATTGACCTCACTCGCAACTACCTTAACGGTACAATACCTAAGGAATGGGGCTCCTCCAATCTTCGCATCATTTCTCTTCTTGGAAACCGACTGACTGGTACAATCCCAACGGAGATAGGAAACATTACCACACTTGAGAGTTTGGTCCTCGAGGACAATCAATTCTATGGAAATCTTCCTCCGGAACTTGGGGACCTTTCAAACATTGAAAGATTGCATCTTACCTCTAACAACTTTACTGGAGAGCTCCCTGAAACTTTGGCGAGACTTACAACATTGAGGGAACTACGACTTGGTGACAATCAATTCTCTGGAAAGATACCCGATTTTATTCAAAGATTGACAAATCTTGAAATGCTAGTAATTCAAGGGAGTGGTTTAAGTGGCCCAATTCCTTCTGGAATTTCATTTCTGCAAAGCTTAACCGACTTGTGGATTAGTGACTTGAATGAAGGTGGTGATTCTACTTTTCCACGAATTGATAACTTGACAAAATTGGAAAGATTGATATTAAGGAGTTGCCAAATAAATGACACGTTACCCCAATATCTTGGGAACATGACAAGTTTGAACTCTTTACAATCCATAGACCTGAGCTATAACAAATTAAGTGGAAACATTTCAGAAACTTTTGAAGAGATATCAAGATTGACTTACCTATATTTAACTGGAAACTCATTCACTGGACCAGTACCCAAGTGGGTAGAGAAAGCTGATCACTACATAGATCTTTCATATAACAACTTCAGCAATGAAAACGTCCAGCAACAGACATGCCAACAAAGTACAAAATCGAAAGTGAACTTGTTTGCAAGCTTTCCAAATAGCAAAAATGGACCAATTTATTGTCCGACGACAAGAAATGATTGTTCTAAAACCGTTAACTCTCTCCATATCAATTGTGGAGGAAGAAAAATAGAGAGTGGAGGTATAATATATGAGGATGATTTAGATCAAGCTGGACCAGCAATATCGAAAGAGCAAGGAGAAAATTGGGCATTTAGCAACACTGGTTACTTCTTGGATAATGGCACTGCAGCAGAAGCTTATATACAAGAAAACAACACTAGGCTTTCAATGCCTGATTTTACACTATATCAAACTGCACGTGTGTCCCCAATTTCTCTGACCTATTATGGTTTTTGTCTAGAAAATGGAGACTACACAGTAACGCTCCATTTTGCAGAGATAATGTTCACTGATGATGACACATATAGTAGCTTAGGGAGGCGTATATTTGATGTTTACATTCAGGGAGTGCGGGTATTGACAGATTTCAATATTGCAAATGCAGCAGGAGGAGTTGGAAAGGAAACTATACAACGATTTCCTACTTCTGTGAATAATAACTCTTTAAAAATACGTTTTTATTGGGCTGGAAAAGGGACAACTGATATCCCATATAAATCCATATATGGCCCTCTTATATCAGCTATATCTATAAGTCATGATTCTACAAGTGGCATATCTGCAGGGGTTGTGGTTGGAATAGTAGCTGCTGCAATTTTTGTTGTCATCATGTTTGTACTACTTTGGTGGAAAGGTTATATTGGGAAAAGAAATTCGTTAGCAAAAGAGTTGAAGGATTTAAATCTGCAAACGGGTTTATTTACTTTGCGTCAAATTAAAGTTGCAACAAATAACTTCGATGTTTCTAATAAGATCGGAGAAGGGGGCTTTGGTCCTGTTTATAAGGGCATTTTGTCTGATGGCACAATAATAGCTGTGAAGCAGCTTTCATCTAAGTCAAAGCAAGGAAACCGTGAGTTTGTAAATGAGATAGGCATGATTTCTGGTTTGCAACACCCTTGTCTTGTTAAACTTTATGGTTGTTGTGTTGAGGGAGATCAATTGTTGTTGGTATATGAATATATGGAAAACAATAGCCTTGCACAAGCTTTATTTGGTCATGAAAAAAATAATTTAAAATTGGATTGGCCAACAAGGCACAAGATTTGTGTTGGTATTGCGAGAGGTTTGGCATTCTTACATGAAGAATCAAGATTGAAAATTGTCCATAGGGACATTAAGGCCACTAATGTGTTGCTAGACAAAGAATTAAACCCAAAGATATCGGATTTTGGTCTAGCTAAGCTCAATGAGGAAGACAATACTCACATAAGCACAAGAATAGCTGGGACTTATGGATATATGGCTCCAGAGTATGCAATGCATGGTTATTTGACCGAAAAAGCAGATGTCTATAGTTTTGGAGTTGTGGCCTTGGAAATTGTCAGTGGAAAGAACAACACAATCCATCGTTCGAAGCAAGAAGCTTTGCATCTTCTTGATTGGGCACGTTTATTGAAAGAGAAAGGTAACCTAATGGAGCTAGTCGATGGAAGGTTAGGTGCAAATTTCAATGAAGATGAGGCAATGATCATGATCAAAGTAGGTCTCTTATGCACCAATGTCACTTCAAACCTAAGGCCTACCATGTCATCAGTGCTTAGCATGCTTGAAGGAAAAAGTATGATTCCAGAATCAATTTCAGATCCAAATGAGATGATGAATGAAATGAAGTTAGAGGAAATGCGAGAATATTACTACCAAGTAGAAGAAAATAAGATAAGTGAGACACGAACACAAAGCCATAGTTTATCAATTGATGGACCATGGACTACATCTTCATCAGCTGTAGACTTATATCCTGTCCATATTGATTCTTCGTACTTGGAGAAAAGAAATTAA 3024 0.3849 MITTFSQILFLSFLAIWFTSFAANITQPDEVQALKDIANTLGKKDWDLNIDPCGERRNWTTPTVNGVMNNVTCNCSIPGSNFCHVVGILLKSQNLQGVLPPELIRLPYLEEIDLTRNYLNGTIPKEWGSSNLRIISLLGNRLTGTIPTEIGNITTLESLVLEDNQFYGNLPPELGDLSNIERLHLTSNNFTGELPETLARLTTLRELRLGDNQFSGKIPDFIQRLTNLEMLVIQGSGLSGPIPSGISFLQSLTDLWISDLNEGGDSTFPRIDNLTKLERLILRSCQINDTLPQYLGNMTSLNSLQSIDLSYNKLSGNISETFEEISRLTYLYLTGNSFTGPVPKWVEKADHYIDLSYNNFSNENVQQQTCQQSTKSKVNLFASFPNSKNGPIYCPTTRNDCSKTVNSLHINCGGRKIESGGIIYEDDLDQAGPAISKEQGENWAFSNTGYFLDNGTAAEAYIQENNTRLSMPDFTLYQTARVSPISLTYYGFCLENGDYTVTLHFAEIMFTDDDTYSSLGRRIFDVYIQGVRVLTDFNIANAAGGVGKETIQRFPTSVNNNSLKIRFYWAGKGTTDIPYKSIYGPLISAISISHDSTSGISAGVVVGIVAAAIFVVIMFVLLWWKGYIGKRNSLAKELKDLNLQTGLFTLRQIKVATNNFDVSNKIGEGGFGPVYKGILSDGTIIAVKQLSSKSKQGNREFVNEIGMISGLQHPCLVKLYGCCVEGDQLLLVYEYMENNSLAQALFGHEKNNLKLDWPTRHKICVGIARGLAFLHEESRLKIVHRDIKATNVLLDKELNPKISDFGLAKLNEEDNTHISTRIAGTYGYMAPEYAMHGYLTEKADVYSFGVVALEIVSGKNNTIHRSKQEALHLLDWARLLKEKGNLMELVDGRLGANFNEDEAMIMIKVGLLCTNVTSNLRPTMSSVLSMLEGKSMIPESISDPNEMMNEMKLEEMREYYYQVEENKISETRTQSHSLSIDGPWTTSSSAVDLYPVHIDSSYLEKRN* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0488 1007 SUPERFAMILY L domain-like 80 361 - -
Apr2g0488 1007 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 390 975 - -
Apr2g0488 1007 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 289 361 - -
Apr2g0488 1007 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 73 287 - -
Apr2g0488 1007 Gene3D Ribonuclease Inhibitor 264 385 IPR032675 -
Apr2g0488 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Apr2g0488 1007 SMART serkin_6 660 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0488 1007 Gene3D Transferase(Phosphotransferase) domain 1 736 944 - -
Apr2g0488 1007 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 390 975 - -
Apr2g0488 1007 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 289 361 - -
Apr2g0488 1007 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 73 287 - -
Apr2g0488 1007 ProSiteProfiles Protein kinase domain profile. 660 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g0488 1007 Pfam Leucine rich repeat 276 337 IPR001611 GO:0005515
Apr2g0488 1007 Pfam Malectin domain 407 590 IPR021720 -
Apr2g0488 1007 Gene3D Ribonuclease Inhibitor 195 263 IPR032675 -
Apr2g0488 1007 Gene3D Ribonuclease Inhibitor 29 194 IPR032675 -
Apr2g0488 1007 Gene3D Phosphorylase Kinase; domain 1 628 735 - -
Apr2g0488 1007 SUPERFAMILY Protein kinase-like (PK-like) 643 946 IPR011009 -
Apr2g0488 1007 Gene3D - 405 597 - -
Apr2g0488 1007 CDD STKc_IRAK 666 933 - -
Apr2g0488 1007 Pfam Protein tyrosine and serine/threonine kinase 662 875 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0488 Apr-Chr2 5669082 5678215 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0488 21 969 Receptor kinase-like Gene Family AT1G53420 53.838 0.0 977
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Apr2g0488 PK_Tyr_Ser-Thr 4.2e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g0735 5 10168890 10189870 Apr2g0488 2 5669082 5678215 PCT