Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g0440 ATGAGAGGGGGGGTGGGGGAGATAGTGGAAGTTGAAGGGGGTCACATTGTGCGGTCCACGGGGCGGAAGGACCGACACAGCAAGGTTTGCACCGCCAAAGGCCCAAGAGACCGCCGGGTCAGGCTTTCGGCCCACACCGCCATCCAGTTCTACGACGTACAAGACCGTCTGGGCTACGACCGCCCCAGTAAGGCCGTCGACTGGCTCATCAACAAGGCCAAATCCGCCATCGACCAACTCGCCCACCTCCCACCCTGGAAACCTACACTCCCTGTTCCTAATAATCAAAACGACGACGAATCGCACAACCCTAACCCCAACCCCAACCCCGATGAAGCAATTCTCCGCCAGTTAGGGGAAAATGAAAACGACAACGAGAACGGAACTGAGAACGAGAACGAGAGCTTCCGCCACCACGATGGCGGTGGTGGAGGTTCTGCTTTTCTTCCGTTGGACAACGACGCGATTCGGTCTTTCTTCCCCACCACCACATCGTCGTTGATTCAGTTCCAGAGCTACCCGCCGGATTTGCTTTCCAGAACGAGTAGCCAGGATCTCAGGCTCTCGCTTCAGTCGTTGCAGGATCCGATTCTGCTTCACCAGAACCAGAACGAGCACGTGCTTTTTACCGGCACCGGGTTCGATGGCATGGTGGCTTGGAACAATGCTTCTGCTGTTGCTGCTAATGATACTGGTAACGATGGCAGTGGTGGTGGTGGTGGAGGAGGAGGGTTTGTGTTTAACGCTCCTTCAGCTTCGCTGGTGCCGGCGACATCGCCGGCGGTGGTGTTTGGCCAAGGCCAGTATCTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACAACCCTTCAGTTCGTGCTTGGATTGACGCGCCGTCATTCGTCGCCGCCGATCATCATCTTCATCATCATCATCGGCATCATTATCTTTCGCCGGCGGCGTTGGTGTATCAGTCTTCTCCTTCTTCGGCATTTGCTCCCGGTGGCTTCACCGGTTTCCGCGTGCCGGCACGAATTCAGGGTGAGGAGGAACACGACGGCGTTTCCGATAAGCCGTCCTCTGTTTCCTCCGATTCTCGCCGTTGA 1083 0.566 MRGGVGEIVEVEGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKSAIDQLAHLPPWKPTLPVPNNQNDDESHNPNPNPNPDEAILRQLGENENDNENGTENENESFRHHDGGGGGSAFLPLDNDAIRSFFPTTTSSLIQFQSYPPDLLSRTSSQDLRLSLQSLQDPILLHQNQNEHVLFTGTGFDGMVAWNNASAVAANDTGNDGSGGGGGGGGFVFNAPSASLVPATSPAVVFGQGQYLSQRGPLQSSNNPSVRAWIDAPSFVAADHHLHHHHRHHYLSPAALVYQSSPSSAFAPGGFTGFRVPARIQGEEEHDGVSDKPSSVSSDSRR* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g0440 360 PANTHER TRANSCRIPTION FACTOR TCP4 2 359 - -
Apr2g0440 360 ProSiteProfiles TCP domain profile. 22 80 IPR017887 -
Apr2g0440 360 Pfam TCP family transcription factor 21 104 IPR017887 -
Apr2g0440 360 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 359 IPR005333 GO:0003700
Apr2g0440 360 MobiDBLite consensus disorder prediction 335 360 - -
Apr2g0440 360 MobiDBLite consensus disorder prediction 92 110 - -
Apr2g0440 360 MobiDBLite consensus disorder prediction 83 148 - -
Apr2g0440 360 MobiDBLite consensus disorder prediction 337 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g0440 Apr-Chr2 5106308 5109916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g0440 3 359 TCP Transcription Factor Family AT1G53230 46.599 1.37e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Apr2g0440 TCP 9.7e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g0440 2 5106308 5109916 Apr5g0149 5 1296261 1299293 ECH
Apr2g1876 2 24315581 24318917 Apr2g0440 2 5106308 5109916 ECH
Apr3g0993 3 24783493 24787425 Apr2g0440 2 5106308 5109916 ECH
Apr2g0440 2 5106308 5109916 Apr3g0993 3 24783493 24787425 ECH
Apr2g0440 2 5106308 5109916 Apr2g0440 2 5106308 5109916 ECH