Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1539 ATGGCCGACGTCGTTTCAAAGAGCCCCACCACCATCACTCCCACCAACAAGAAGGAAACATCGAGCCTGTTACTTGGTCGCTTCGAGATTGGGAAGCTCCTTGGCCATGGAACCTTTGCGAAGGTTTACTACGCGAGAAACATTAAAAGCGGGGAAGGTGTTGCCATCAAGGTGATTGACAAAGAGAAGATTCTGAAGGGTGGGTTGGTGGCACACATCAAGCGCGAGATCTCGATTCTGCGCCGTGTTCGCCACCCTAATATCGTGCAACTCTTCGAGGTAATGGCTACAAAGACAAAGATCTATTTTGTAATGGAATACGTTCGTGGGGGTGAGCTTTTCAACAAGGTTGCAAAAGGGAGGCTCAAGGAAGAGGCTGCAAGGAAGTACTTTCAGCAATTGATCTCTGCAGTTGGCTTTTGCCACGCTAGAGGGGTGTACCATAGGGATCTTAAGCCTGAAAATTTGTTGCTTGATGAGAACGGGAATCTAAAGGTCTCTGATTTTGGGTTGAGTGCGGTTTCTGATCAAATCAGGCAAGATGGATTGTTCCATACGTTTTGTGGAACACCTGCTTATGTTGCTCCTGAGGTTTTGGCAAGGAAAGGTTATGATGGTGCTAAGGTTGATCTTTGGTCTTGTGGGGTGGTTTTGTTTGTATTGATGGCTGGGTATTTGCCTTTTCATGATCAGAATGTGATGGCAATGTATAAGAAGATTTACAGGGGTGAGTTCAGGTGTCCACGGTGGTTCTCACCTGATCTTTCTAGGCTTCTAACTCGGCTTCTCGATACCAAGCCTGAAACCCGGATTGCTATTCCTGATATCATGGAGAACAAGTGGTTCAAAAAAGGTGTTGATGATAACCTTATGGACAATGAGGATGATACAGCATCTATTGCATCTTTTGTTTCTGATTACTCAGTGTCAGAATCTGATTCTGAGGTTGAGACTAGAAGGAAGCATGCTCCTTTGCCAAGACCTGCCAGTTTGAATGCTTTTGACATTATATCATTCTCTCCTGGCTTTGATCTTTCTGGTTTGTTTGAGGAGAAAGGGGACGAGGCAAGGTTTGTGACTGCTGCACCGGTTTCTAGGATCATATCAAAATTGGAGGAGATTGCTCAGTTGGTAAGTTTTACTGTGAGGAAGAAAGATTGTAGGGTGAGCTTGGAGGGTACCCGAGAAGGTGTGAAGGGTCCATTGACTATAGCTGCTGAGATATTTGAATTGACACCTTCTTTGGTTGTGGTGGAGGTGAAGAAAAAAGGAGGTGACAGAGCGGAGTATGAGAGATTTTGCAACAATGAATTGAAACCAGGGCTGCAAAATTTGATGGCCGAGGAATCTGCAACTTCTTCAGGCTTGTCTACACCTACTGAGCCTTCTTTACTACGTGTGCTTTCTGAACCCGTGCATAACATAGCTTCGGATATTGAAACTCAACGCTATATACCTACTGATGATTGA 1470 0.4497 MADVVSKSPTTITPTNKKETSSLLLGRFEIGKLLGHGTFAKVYYARNIKSGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEAARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYRGEFRCPRWFSPDLSRLLTRLLDTKPETRIAIPDIMENKWFKKGVDDNLMDNEDDTASIASFVSDYSVSESDSEVETRRKHAPLPRPASLNAFDIISFSPGFDLSGLFEEKGDEARFVTAAPVSRIISKLEEIAQLVSFTVRKKDCRVSLEGTREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDRAEYERFCNNELKPGLQNLMAEESATSSGLSTPTEPSLLRVLSEPVHNIASDIETQRYIPTDD* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1539 489 Gene3D Kinase associated domain 1, KA1 327 447 - -
Apr1g1539 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Apr1g1539 489 SUPERFAMILY Protein kinase-like (PK-like) 24 333 IPR011009 -
Apr1g1539 489 SMART serkin_6 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1539 489 Pfam NAF domain 328 384 IPR004041 GO:0007165
Apr1g1539 489 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1539 489 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 18 452 - -
Apr1g1539 489 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Apr1g1539 489 PANTHER - 18 452 - -
Apr1g1539 489 ProSiteProfiles Protein kinase domain profile. 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g1539 489 ProSiteProfiles NAF domain profile. 326 350 IPR018451 GO:0007165
Apr1g1539 489 CDD CIPK_C 332 443 - -
Apr1g1539 489 CDD STKc_SnRK3 27 281 - -
Apr1g1539 489 Gene3D Transferase(Phosphotransferase) domain 1 18 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1539 Apr-Chr1 24884897 24886845 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1539 1 449 CBL-interacting serine-threonine protein kinases AT4G18700 77.007 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Apr1g1539 Pkinase 2.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1539 - - gmx:100790133 854.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1539 1 24884897 24886845 Apr1g1539 1 24884897 24886845 ECH