Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1520 ATGGCGGAATTGCAAGACGGTGAAGGGATAAAGCTATTTGGGGCAACGATAAGATTGGAGGGTAAGGAAGTGAAAAAGGGGAGTGAAGAAGAGAGGGTGGAGAAGGAGAAGAGAATAGCGTGCCCAAGATGCAAGAGCATGGAAACTAAATTCTGCTATTTCAATAACTACAACGTCAATCAGCCAAGGCATTTCTGCAAGACCTGCCAGAGGTACTGGACCGCCGGTGGGGCCCTCCGTAACGTCCCAATCGGAGCCGGCCGCCGCAAGGCCAAGTCGCCGACCCATGAAACCGGTGAAGAGAACAAGTTAGGGATGGAAGAGGGATTGCTTTTGGATGAATGGCACGTTACGGCTGATTTCCGCCACATTTTTCCGCCCAAGAAGCCCAGAACGACCTCAGGAGGTTACCCTACGCATGCTCTCTCTCTCTCTTCCTTTCCTTTTAGCGTAAATTACGTTTATATATATAGTCTTCAAGTTTAA 486 0.4918 MAELQDGEGIKLFGATIRLEGKEVKKGSEEERVEKEKRIACPRCKSMETKFCYFNNYNVNQPRHFCKTCQRYWTAGGALRNVPIGAGRRKAKSPTHETGEENKLGMEEGLLLDEWHVTADFRHIFPPKKPRTTSGGYPTHALSLSSFPFSVNYVYIYSLQV* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1520 161 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Apr1g1520 161 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Apr1g1520 161 PANTHER CYCLIC DOF FACTOR 2 5 134 IPR045174 GO:0003700|GO:0006355
Apr1g1520 161 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Apr1g1520 161 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 5 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1520 Apr-Chr1 24681051 24681536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1520 5 136 C2C2-Dof Transcription Factor Family AT2G34140 50.610 8.99e-47 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr1g1520 zf-Dof 7.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1520 - - vra:106779806 171.014
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1520 1 24681051 24681536 Apr1g1520 1 24681051 24681536 ECH