Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1437 ATGTCGGGTAACTCTGAGAAAATGGTACTCATTCCTCCAACCACTAACCAATGGCCACAGATAATAGACGATCATAAGGTCTCGATGGGTTCCTCAAGTGGTAGTAGGGTAATGGAAAAACCAGGTCAAGATCTTCAGCATCAGCAGCAACAACAACAACAACATGCCCTCAAGTGCCCTCGCTGTGACTCATCAAACACCAAGTTTTGTTACTACAACAACTACAGTTTGTCACAGCCAAGACACTTCTGCAAAGCCTGCAAACGCTATTGGACAAGAGGTGGAACCCTCAGGAATGTTCCTGTTGGTGGTGGATGCAGAAAAAACAAGCGTGTCAAGCGCCCTATGGTCACCACCTCCTCTGCCATTGACACTGCTTCTTCTTCTTCTTCAGCTCCTACTGCAGCTTCACAAGCCCAGATCGACACTGCTTCAACCTCAAATCATGTCAACCCTTTGTTTTATGGGTTACCCAGTAACTCTAGCGATGTGAGTCTTCCATTCCCAAGGTTCAATTCTAGAGTCTCAAGTTCTGGGTATGATCTTCAGCCTCATCAGCTGAATAATGCCCTTGGATTGGGTTTTTCATCCGGGATTATATCCAATCAAGCTGCTGATAATAATAATGGTTATAGCCAGAGGAATGGGTTTATTTCAAATAATATACTTGTTTCAAGTAATTATAATTCCATCTTTAGTTCTTCTTCAACTTCTACATCCACTACTACTCCAGTTATGTCTTCTCTATTGAGCTCGACTCTGATGCAACAAAAGCTCAATATCATCGGTGGATTGAAAGATGTTATTGATAGCAACAGATTCCAGCAGGGCTTAGCCCCACTGGAGCAGCTGCAAATGGCAAGAAATAGCAATGAGGCAGAGATGGTGGCTTTAAAAGATGTGAAAGTGGAATTAGGACAAAACAGCAGGTTGGAGTGGAATGGTGCTTGCCAAAACCAGATCGAGCATGTGGGCTTGTACGATCCTTCGCTTTATTGGAATACACCAACGGCTATGAGTGTTTGGAATGATCAAGCTAATATTGGTCCATCAGTCACTTCTCTGATCTAG 1071 0.4351 MSGNSEKMVLIPPTTNQWPQIIDDHKVSMGSSSGSRVMEKPGQDLQHQQQQQQQHALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVKRPMVTTSSAIDTASSSSSAPTAASQAQIDTASTSNHVNPLFYGLPSNSSDVSLPFPRFNSRVSSSGYDLQPHQLNNALGLGFSSGIISNQAADNNNGYSQRNGFISNNILVSSNYNSIFSSSSTSTSTTTPVMSSLLSSTLMQQKLNIIGGLKDVIDSNRFQQGLAPLEQLQMARNSNEAEMVALKDVKVELGQNSRLEWNGACQNQIEHVGLYDPSLYWNTPTAMSVWNDQANIGPSVTSLI* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1437 356 MobiDBLite consensus disorder prediction 29 52 - -
Apr1g1437 356 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 4 342 IPR045174 GO:0003700|GO:0006355
Apr1g1437 356 ProSiteProfiles Zinc finger Dof-type profile. 57 111 IPR003851 GO:0003677|GO:0006355
Apr1g1437 356 Coils Coil 281 301 - -
Apr1g1437 356 ProSitePatterns Zinc finger Dof-type signature. 59 95 IPR003851 GO:0003677|GO:0006355
Apr1g1437 356 MobiDBLite consensus disorder prediction 115 142 - -
Apr1g1437 356 MobiDBLite consensus disorder prediction 106 142 - -
Apr1g1437 356 Pfam Dof domain, zinc finger 55 111 IPR003851 GO:0003677|GO:0006355
Apr1g1437 356 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-LIKE 4 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1437 Apr-Chr1 23678015 23680041 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1437 57 356 C2C2-Dof Transcription Factor Family AT1G28310 37.461 2.42e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr1g1437 zf-Dof 2.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1437 - - ccaj:109814566 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1437 1 23678015 23680041 Apr1g1437 1 23678015 23680041 ECH
Apr3g1783 3 33672670 33675001 Apr1g1437 1 23678015 23680041 PCT