Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1436 ATGGAGCAAGAAGGAGGTGCCAGAGGAAGTGGAGAAGGAGGTGACGTGAGTAAGCAACCACAGGATCGAAGAGCAAAAGATATGCAACAAGGAGATGGACAAGGACAGGTTCAGGCTCAGCCTCCTCCTCAGCAACCCCAAAAGTGTCCTCGTTGTGAATCTCTCAACACCAAATTTTGCTATTACAACAACTATAGCTTGTCACAGCCTCGTTACTTCTGCAAAACATGCAGAAGGTACTGGACCCAAGGTGGAACCTTGAGGAACGTTCCTGTTGGTGGTGGTTGCCGCAAGGGGAAGCGCGCCAAAAATTCTTCATCTTCTGCGGAGAATTCCTCCCGGTCTCAGCCACAACCACTACCACAAGAGGTGGCTCAAACCCAACCATCATTAACAACTGTGGTGAGGGCTAAAGACCCTTCTTCAGTTGTGGCTTCACCCTTCTATCAAGGTGGTGGTGGAGGGTACTTGTCTTCTCTGGCTGCTATTCATTCACTCAACCCATCACACCCTTTTGATCAGTCTTTGAATGTTGGGGGTGACGCCGTGCGTTCTTCTAATTTGGGTCTTCTATCTGGTTTTAATGTTGCTGCTCTTGGCCCACACCGCCCAATTCGTCCACCACACTTGTATCAAATGGGTGGCAATGAAAGGGAGGTGGTGAATCTGTATGCGGGAGAACCAGGTTTGATTAATCCATCTAGCATGGCTCATAGTGGTGCTGTTTCTCAGCATGATTGGACTCACAACTTCATCAATAATAATGCTAGTGATAGGGTCGTTTCTGATGCTTCTTTGTGGAGTACCATCAGCACCACTTCTATTGGTGGCAACTCTGAAAGTACTAGTGCTAGTGCTGGTTCTTCTTCTTTGGTTCCAAATCAATGGCCTAATCTTCCAGGGTATGGCCCTCCGCCGTGA 921 0.4832 MEQEGGARGSGEGGDVSKQPQDRRAKDMQQGDGQGQVQAQPPPQQPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRAKNSSSSAENSSRSQPQPLPQEVAQTQPSLTTVVRAKDPSSVVASPFYQGGGGGYLSSLAAIHSLNPSHPFDQSLNVGGDAVRSSNLGLLSGFNVAALGPHRPIRPPHLYQMGGNEREVVNLYAGEPGLINPSSMAHSGAVSQHDWTHNFINNNASDRVVSDASLWSTISTTSIGGNSESTSASAGSSSLVPNQWPNLPGYGPPP* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1436 306 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 305 IPR045174 GO:0003700|GO:0006355
Apr1g1436 306 MobiDBLite consensus disorder prediction 273 306 - -
Apr1g1436 306 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Apr1g1436 306 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Apr1g1436 306 Pfam Dof domain, zinc finger 45 101 IPR003851 GO:0003677|GO:0006355
Apr1g1436 306 MobiDBLite consensus disorder prediction 1 49 - -
Apr1g1436 306 MobiDBLite consensus disorder prediction 88 127 - -
Apr1g1436 306 MobiDBLite consensus disorder prediction 273 296 - -
Apr1g1436 306 MobiDBLite consensus disorder prediction 101 127 - -
Apr1g1436 306 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 12 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1436 Apr-Chr1 23664792 23668792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1436 42 123 C2C2-Dof Transcription Factor Family AT5G60200 68.293 1.71e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr1g1436 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1436 - - gmx:102668884 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1436 1 23664792 23668792 Apr1g1436 1 23664792 23668792 ECH
Apr3g1784 3 33686925 33687671 Apr1g1436 1 23664792 23668792 PCT