Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1390 ATGGGTTTGAGTTCTAAGCAGGTTTCAAGTACAGGACTTGATTGGAACCAGACCTTGTTGCAGGCTCAAAACTTGGAGCTCCCAAAGCCTCCTCCTATGAGGAAACAACAACAACAACAACAACAAACTCAGCAATCAGAACCTTTGAAGTGCCCAAGATGTGATTCTACTAACACCAAATTTTGTTATTACAACAACTACAATAAGTCTCAGCCTCGGCATTTCTGCAGAGCTTGTAAGAGGCACTGGACTAAAGGTGGAACTCTGCGCAATGTTCCTGTAGGTGGTGGCAGGAAGAATAAGCGAGTCAGGAAATCAACCACTCCAACAACCACTGTCACCACTTCTATTAGTACCACCACCTCAAATGGCAACATGGATGCTGAATTGAGTACCCACATCACAATTCCTCCTCTTTCAGTGGGTGATCAGAAAACCATACCCTCCTCACTCTATCAATCCTTGCTGCCACAACAGAATCTGTTGAGTACCAAAGACACAGAAGGGATGGATGACTATTGA 522 0.4444 MGLSSKQVSSTGLDWNQTLLQAQNLELPKPPPMRKQQQQQQQTQQSEPLKCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRVRKSTTPTTTVTTSISTTTSNGNMDAELSTHITIPPLSVGDQKTIPSSLYQSLLPQQNLLSTKDTEGMDDY* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1390 173 MobiDBLite consensus disorder prediction 1 24 - -
Apr1g1390 173 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 35 133 IPR045174 GO:0003700|GO:0006355
Apr1g1390 173 Pfam Dof domain, zinc finger 48 101 IPR003851 GO:0003677|GO:0006355
Apr1g1390 173 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Apr1g1390 173 PANTHER OS06G0284500 PROTEIN 35 133 - -
Apr1g1390 173 MobiDBLite consensus disorder prediction 106 126 - -
Apr1g1390 173 MobiDBLite consensus disorder prediction 95 126 - -
Apr1g1390 173 MobiDBLite consensus disorder prediction 1 50 - -
Apr1g1390 173 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Apr1g1390 173 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1390 Apr-Chr1 23016018 23017872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1390 33 113 C2C2-Dof Transcription Factor Family AT1G51700 58.025 1.18e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr1g1390 zf-Dof 6.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1390 - - aprc:113852494 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g1828 3 34158489 34160593 Apr1g1390 1 23016018 23017872 PCT