Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g1016 ATGCAGGAAATACACTCCCTCGGCGGCGGAAGGTTTTTCGGCGGCGGCGGAGACCGGAGATTGAGGCCCAACCACCACAACCACCAGCAACCCCTGAAGTGCCCTCGCTGTGACTCACTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCTCAGCCGCGCCATTTCTGCAAGAACTGTCGCCGCTACTGGACCAAAGGCGGCGTCCTCCGTAACGTCCCCGTCGGCGGCGGTTGCCGGAAATCAAAGCGCTCCAACAAGCCGAAAGCCACCACCAACAACAACAACACTTCCTCTTCCTATGAAACCGCCCCCACGCCGCAACCGCCGCCCCTGTCACAGCCGTCGGAGCGGGAACGTAACTCTAATTCTCACTCCAGCAGCGAAAGCTCCACCCTAACCGCGGCGGAGGCGGTGTCGGCGCCGACATCAAACGCTGCGTCGAACAACAATTTGTTACGCGACAACATTCGCGAGTCGAAGCTGTTCGCCAACCCCTCTTCGGAACTTGAACAAGAAGGTGGTGGTGGTGATCACTCTGGCATTTTCTCTGAGATAGGGAGCTTGACGAGCCTTGTCACTTCTAATAACGAGGCGCTGGCTTTTGGCTTTGGGAATAACAATAACATCCTCGATGCGACGTCGTTTCGGTTCGGTCCTACTCATCCGCACGGGAATGATCAGGTACAAGTGGCACCAGGTAGTGGCCACGGGCAGTGTCAGTGGCAACAGCAGAATCACGAGGAGTTCGCTGCGGCGTCGTTTCTTGATCACGCGCTTTCGCTTGAGCTCTCTACGCTGCAGAATAAAACTGGGCATGGAGCGTTTGGATCGTTGGATTGGCATGCCGGTTCAGATCAAGGTTTGTTTGATCTTCATCACACCGTAGATCAACCTTACTGGACCCACACTCATTGGTCTGATCAAGACAATCCCACTCTCTTTCATCTTCCCTGA 963 0.5504 MQEIHSLGGGRFFGGGGDRRLRPNHHNHQQPLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPKATTNNNNTSSSYETAPTPQPPPLSQPSERERNSNSHSSSESSTLTAAEAVSAPTSNAASNNNLLRDNIRESKLFANPSSELEQEGGGGDHSGIFSEIGSLTSLVTSNNEALAFGFGNNNNILDATSFRFGPTHPHGNDQVQVAPGSGHGQCQWQQQNHEEFAAASFLDHALSLELSTLQNKTGHGAFGSLDWHAGSDQGLFDLHHTVDQPYWTHTHWSDQDNPTLFHLP* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g1016 320 ProSiteProfiles Zinc finger Dof-type profile. 32 86 IPR003851 GO:0003677|GO:0006355
Apr1g1016 320 MobiDBLite consensus disorder prediction 90 105 - -
Apr1g1016 320 Pfam Dof domain, zinc finger 30 86 IPR003851 GO:0003677|GO:0006355
Apr1g1016 320 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 307 IPR045174 GO:0003700|GO:0006355
Apr1g1016 320 PANTHER DOF ZINC FINGER PROTEIN 4 15 307 - -
Apr1g1016 320 MobiDBLite consensus disorder prediction 1 33 - -
Apr1g1016 320 MobiDBLite consensus disorder prediction 76 154 - -
Apr1g1016 320 ProSitePatterns Zinc finger Dof-type signature. 34 70 IPR003851 GO:0003677|GO:0006355
Apr1g1016 320 MobiDBLite consensus disorder prediction 117 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g1016 Apr-Chr1 16807387 16808645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g1016 18 320 C2C2-Dof Transcription Factor Family AT5G60850 39.032 2.43e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Apr1g1016 zf-Dof 4.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g1016 - - gmx:778116 411.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g1016 1 16807387 16808645 Apr1g1016 1 16807387 16808645 ECH